Phoenix dactylifera (date palm): 103705523
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Entry
103705523 CDS
T03274
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103705523
09123 Folding, sorting and degradation
03018 RNA degradation
103705523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103705523
03041 Spliceosome [BR:
pda03041
]
103705523
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103705523
mRNA cycle factors
Stress granule specific factors
103705523
Spliceosome [BR:
pda03041
]
Complex C
Other components
Complex C specific factors
103705523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_RdRP1_2
RRM_2
RRM_PARP14_3
RRM_YTH1
Chordopox_A30L
Motif
Other DBs
NCBI-GeneID:
103705523
NCBI-ProteinID:
XP_017697610
UniProt:
A0A8B7MTK7
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All DBs
Position
9:complement(21423638..21436544)
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AA seq
652 aa
AA seq
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MANPAPSPLAAPAQPSPGQMSPAPAHGGAFGNASLYVGDLDLSVTEGQLFDLFSQIGPVA
SVRVCRDQIRRVSLGYAYVNFHNPQDASHALEVFNFTPINGKSIRIMFSHRDPSVRRSGY
ANVFIKNLDHTIDNKSLHDIFVSFGAILSCKVATDFNGQSKGYGFVQFEHEDAARKAIGQ
LNGMLINEKQVYVGFFIRRQEREPANGSPKFFNVYVKNLPEKYTDDDLKSEFEASGEITS
AVVVKDENGNSRGFGFVNFKDSKAAASAVEKFNGKALNDKVLYVGKAQKKSEREAELKVK
YEQERNGRMDKIRGLNLYLKNLDDTIDDERLKELFRPFGTIISCKVMVDSQGQSKGSGFV
QFSSPKEANSAINEMNGKMTGKKPLYVAVAQRKEDRRARLQAHFAQLSAQGTMTPAMPSM
PAYHPGPPRLAPQQLYFGQGAPGLIPPQPTGYGFQQHLVAGIRPGVAPNFMMPYTLQRQG
QPGQRVGARRGGMSQQMQQHQQLIQRSANQGFRYMQNAHNGVDPTMIPQGLMGPMMPLPL
DASGMHVAPMDAVRSSPIPITSLASALASATPENQRLILGEQLYPLVECIERDQAGKVTG
MLLEMDQNEVLHLIESPDALQEKVAEAMEVLQLAHAPGSDAADQLGSLSLND
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccggctccctctcccctcgccgcccccgcgcagccttccccggggcagatg
tcgccggcgccggcgcacggcggggcgttcggaaacgcatctctctacgtcggtgatctc
gacctgtccgtcacggagggacagcttttcgatctttttagccagatcgggccggtcgca
tccgttagggtttgcagggaccaaatccgcagggtctccctcggttatgcttacgtcaat
ttccacaacccccaggacgctagccatgccttagaggtctttaatttcacccccataaat
ggaaagtctatcagaattatgttttcccaccgagatcctagtgttcgaaggagcggatat
gctaatgtatttatcaagaatcttgaccacacaatcgataacaagtcattgcatgatata
tttgtttcgtttggtgctatcctttcttgtaaggtggccactgattttaatggtcagtcg
aaaggttatggttttgtacagtttgaacatgaagatgcagctcggaaagctattggtcaa
cttaatggaatgttgatcaatgaaaaacaagtgtatgttggtttctttatccgtcgtcaa
gagagggaacctgcaaatggatctccaaagttctttaatgtatatgtaaagaatttgcct
gaaaaatacactgatgatgatttgaaaagtgaatttgaagcatctggtgagatcaccagc
gcagtagttgtgaaagatgaaaatggaaattccaggggatttggctttgtaaattttaaa
gactcaaaagctgctgcttctgcagttgagaaatttaatggaaaagctttaaatgataaa
gttttatatgttggaaaagctcaaaaaaaatctgaaagagaggccgagttaaaggtcaaa
tacgaacaggagagaaatgggagaatggacaaaattcgaggacttaatttgtatttgaag
aatcttgatgacactattgatgatgaacgccttaaagagctgttccgtccgtttggcact
ataatttcctgcaaggtcatggtggattcacaagggcagagcaagggttctggtttcgtg
caattttcatctccaaaggaggctaacagtgctataaatgaaatgaatggcaagatgact
ggaaagaagcctttatatgttgctgtggctcaacgtaaagaggatagaagagcaaggttg
caggctcatttcgcacagcttagtgctcaagggactatgacacctgcaatgccctctatg
cctgcctaccaccctggtccacctaggcttgcccctcagcaactttactttggacagggt
gctcccggtctcattccaccccaacctacagggtatggtttccaacagcaccttgttgca
ggaatccgccctggtgttgcccctaacttcatgatgccttacacccttcagaggcaagga
caacctggacagagggtgggtgctaggcggggaggaatgtcacagcagatgcagcagcac
cagcagttgattcagcgtagtgctaatcaaggctttagatatatgcaaaatgctcataat
ggggttgatccaacaatgatacctcagggtctgatgggtccaatgatgcctttgccactt
gatgcaagtggtatgcatgttgctccaatggatgcggtccgatcttcaccaattccaatc
acatctcttgcctcagctctagcttctgcaactcctgaaaatcaacgactgatcctgggt
gagcagttatacccacttgttgaatgtattgaacgggatcaggctggaaaagtgactgga
atgctcctagagatggatcaaaatgaggtcctccatcttatagaatctccagatgcactc
caggagaaagttgcagaagctatggaagtcctacaattagcacatgctccaggttcagat
gctgcagatcagcttggttcattgtccctgaatgactga
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