Phoenix dactylifera (date palm): 103705537
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Entry
103705537 CDS
T03274
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103705537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103705537
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103705537
U7-dependent histone pre-mRNA processing factors
103705537
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
103705537
NCBI-ProteinID:
XP_008787501
UniProt:
A0A8B7BXL9
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Position
17:complement(15173042..15192040)
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYSESPLCYLLSIDGFNFLMDCGWNDLFDENLLKPLARVAPKIDAVLL
SHPDILHLGALPYAMKHFKLSAPVYSTEPVYRLGLLTMYDHYLSRRQVSDFNLFTLDDID
TAFQNVTRLTYSQNYHFPDKGEGIVIAPHVAGHLLGGTMWKITKDGEDVVYGVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALNNQLYKRQRDQEFIEAILKALRADGNVLLPVDTAG
RVLELILILEQYWAQQHLTFPIFFLTNVSTSTIDYVKSFLEWMSDSIAKSFEHTRDNAFA
LKHVTLIINKNELEKLAEVPKVVLASMASLEVGFSHDIFVEWATEAKNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTMSKRVPLGGEELKAYEEEQSRIKKEEALKANLIKEEELRTSPG
ADANVAVPMVIDANSSHVSSNVASSRFGEHLDIVIDGFIPPATSVSPMFPFFENTAEWDD
YGEIINPDDYIIKEEDMDQASMQCIGGELDGKLDEGSAHLLLDSTPSKVVSNEMTVQVKC
GLTYMDFEGRSDGRSVKSILAHVAPLKLVLVHGSAEATEHLKQHCAKHVCPHVYAPQIDE
TIDVTSDLCAYKVQLSERLMSNVIFKKMGDYEIAWIDAEVGKTNDMLTLGPLSSTPPTHK
TVLVGDLKLADFKQFLASKGVQVEFAGGALRCGEYVTVRKISDSNQKGVTGTQQVVIEGP
LTEEYYKIREHLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggtgcaggtgactccgctttgcggggtgtacagcgagagcccgctttgc
tatcttctctccatcgatggcttcaacttcctcatggactgcggctggaacgatctattt
gatgaaaatctcctcaaacccctcgccagggtagcaccaaaaattgatgctgttttgctg
tcacatccagatattcttcatcttggtgctctgccatatgccatgaaacactttaaactc
tctgctccagtttattcgacagagcctgtatatagacttggtcttttgaccatgtatgat
cattacctttctcgaagacaagtttcagattttaacttgttcactctggatgatattgat
actgcattccaaaatgttactagactgacatactcccagaattatcattttcctgataaa
ggagaaggaattgttattgctcctcatgtggcgggacatcttctggggggcaccatgtgg
aagataacaaaagatggagaggatgtagtctatggtgttgacttcaaccatcgtaaagaa
cggcacttgaacgggactgtgttagaatcttttgtgcgacctgctgttctgataacagat
gcttataatgccttgaacaatcagctttacaaacgtcaaagagaccaagaatttatcgag
gcaatactcaaggctctgagggcagatggaaatgtgttgcttcctgttgatacagctggg
agggtgctggaacttattttgatactagaacagtattgggcacagcagcatttgactttt
cctatcttctttctgacaaatgtgtctacaagcacaatcgattacgtgaagagcttcctt
gaatggatgagtgactcgatagcaaaatcctttgaacatacacgtgacaatgcctttgca
ttaaagcatgtcacacttataatcaacaagaatgagcttgagaaattagctgaagtccca
aaggttgttctagcatccatggccagtctggaggtggggttctctcatgatatatttgtg
gaatgggcaaccgaagcaaagaatctagtactttttacggaaaaaggccagtttgggaca
ctagctcgcatgcttcaagtggatccacccccaaaagctgtaaaagttactatgagtaag
cgtgttccactaggtggtgaagagttaaaagcctatgaagaagaacaaagtcgaattaaa
aaggaagaagctctaaaagctaatctcatcaaagaggaggaattaaggacatctccagga
gcagatgctaatgtggctgtccccatggtgattgatgcaaattcatctcatgtttcatct
aatgtggctagctcacgctttggtgagcatctggacatcgtcattgatggatttattcct
ccagccacaagtgtttctccaatgtttcccttctttgaaaacacagctgaatgggatgat
tatggtgagatcatcaatcccgatgactacattattaaggaagaagacatggatcaggca
tctatgcaatgcattgggggtgaactagatggtaaacttgatgaaggctcggcccacttg
ctccttgattcaacaccttcaaaagttgtctcaaatgaaatgactgttcaagtcaagtgt
gggttaacttatatggactttgagggccggtctgatggacgctcagtcaaatcaatcctg
gcacatgtggctcctttgaagcttgttctagtgcacggatcagcagaagctaccgagcat
ttgaaacaacactgtgcaaaacatgtttgcccccatgtatatgctccacagatcgacgaa
acaattgatgtcacttctgatttgtgtgcttacaaggtgcagctttctgaaaggttaatg
agtaatgtgatctttaaaaagatgggtgactacgagatagcatggattgatgcggaagta
ggaaagaccaacgacatgcttaccctgggtcctctttcatcaactcctccaactcacaaa
accgttctggtgggagatttgaaattggcagatttcaagcagtttcttgcaagcaaaggt
gtccaggtagaatttgctgggggtgccttgcgttgtggtgagtatgtcacagttcgcaag
atcagtgactccaaccagaagggcgttactggtacccagcaagtggtcattgaaggccct
ctgacagaagaatattacaagattcgagagcatttgtattcacaattttacctgctatag
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