Phoenix dactylifera (date palm): 103705821
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Entry
103705821 CDS
T03274
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103705821
09122 Translation
03013 Nucleocytoplasmic transport
103705821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103705821
03041 Spliceosome [BR:
pda03041
]
103705821
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103705821
Spliceosome [BR:
pda03041
]
Complex C
Other components
EJC/TREX
103705821
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103705821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
103705821
NCBI-ProteinID:
XP_008787912
UniProt:
A0A8B7BYA1
LinkDB
All DBs
Position
15:complement(10002784..10045761)
Genome browser
AA seq
1842 aa
AA seq
DB search
MSVQSPEFKYIAEGCLQEWKASNAAFKLPDPVPMTRFLYELCWAMVRGDLPFQKCGVALD
SVVFVEEQQGEEMASIIADIIAHMGQDLTMPGDCRARLIKMAKCLVESSLVPSRLLQERC
EEEFLWESELTKAKAQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGGLDS
TNESASTVTISIIKSLIGHFDLDPNRVFDIVLECFELYPENTTCYNLIPIFPKSHAAQIL
GFKFQYYQRMDVNTPVPSSLYRLTALLVKANFIDLDNIYAHLLPKDDEAFEHYDAFIAKR
FDEVNKIGKINLAATGKDLMDDEKQDVTIDLFSALDMENDAITERAPEVENNQKLGLLIG
FLSVDDWYHAQILFYRLSHLNPVQHIRICEGLFRVIEKTMSAAYAIVYQTHRQSCAGSDV
VESTAGSSIQNSSVDLPQEFFQMLAAAGPYLHRDAVLLQKVCRVLRAYYLCAEELAGLRA
KQAKLRVEEALGKCVLPSLQLIPANPAVGQVIWEVLSLLPYEDRYRLYGEWEKDDERIPM
ILAARQIAKLDTRRILKRLAKENLKQLGRMVAKLAHSNPMTVLRTIVHQIEAYRDMITPV
VDAFKYLRQLEYDVLEYVVIERLAQGGREKLKDDGLNLSDWLQSLASFWGHLCKKYPSME
LRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQYTENMTEEQLDAMAGGETLRYQATLF
GMTRNNKALTKSTNRLRDSLLPKEEPKLAIPLLLLIAQHRSMVIINADAPYIKMVSEQFD
RCHGTLLQYVEFLLSAVTPSMTYAQLCPPLDDLVHKYHLDAEVAFLVYRPVMRLFKSISG
AEICWPLDITEEPHAPSTNNEAEPSNLSSDVVLDLGSPWKLVNWSDLLDTVRSMLPLKAW
NSLSPDLYATFWGLTLYDLYVPRQRYESEIMKQHAAIKALEELSDTSNIAITKRKKDKER
IQELLDRLTCEFQKHEQHVASVHQRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCIFSM
PDAVYCAMFVHMLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEFEAGRLGRFLYETLKM
AYHWKSDESIYERECGNMPGFAVYYRFPNSQRVTYSQFIRVHWKWSGRITRLLVQCLEST
EYMEIRNALIVLTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKVLATGVAAALAARKS
SWVSEEEFGMGHIDLKHAASPAKSLAGNLGNASNGSALGISQNEMSGTRNATTGNQVADL
LNIVRDQMTRAKSTDGRSDRSEGGMLLKSDSAQQKSRSSSSTNGPDSQTHTSSLPPKPSG
IMKNPDELPKVSAEETVTKVASKGAVESETRPQQKRSAQNSLGRLPKQELVKEDTKSGKS
ISRTAYQQSSATADRDLSAHQSESRQGGTATNSSSTSNGNLSSTSGKVASSSSKMNDVHV
SLSKMESGPIKPLDDNVEAPDAFPKQQKRSVPAEEQDRLNKRRKGDTDGKDGEAMEVRLS
DKEKTFDPRSMEKSHFPDHERPTIEEQSPIRPVDKHSDKSKDKTIERYDKDRREKLDRPD
KSRGGDILEKSRDRSIERHGRERSVERVQERAVDRNIDRSVDKSRDDRSKDDRNKLRHNE
APMDKVHSDERFHGQGLPPPPPLPPSFVPQSVGGSRRDEEPERRVSNTRHTQRLSPRHDE
KERMRSEENVLASHDDAKRRRDDEFREKKWEERGDAPNKVEERDRDKGNVLKDDMDPTAA
PKRRKLKRDHTSSSEAGGEYSPVVPPPPPPLALGISQSFDARERGDRKGIMVQHRAVYVD
EVPRMHGKEAASKINRRETDQIYEREWEEEKQRTEAKRKHRK
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtccaatcccctgaattcaagtacatcgccgagggatgcctccaggaatggaag
gcctcgaacgccgccttcaagctccccgatccggtccccatgacccggttcctctacgag
ctctgttgggccatggttcgcggggatttgccgttccagaagtgcggcgtggcgctggac
tcggtggtgttcgttgaggagcagcaaggggaggagatggcgtccatcatcgctgatatc
atcgcccacatggggcaagatcttacgatgcctggagactgtcgtgctcgtctcatcaaa
atggcaaaatgccttgtcgagtcttcgttggttccatctaggcttttgcaagagcgttgt
gaggaagaatttctgtgggagtctgagttgactaaagccaaggctcaagatttgaaggcc
aaagaggttagagtaaacacccgccttctttatcagcaaacaaaattcaatcttctacga
gaggagagcgagggctatgccaaactggtgacacttctttgtcagggtggtttagattcg
acaaatgagagtgcatcaacggtgacaattagcataattaagtcattaattgggcacttt
gatctggacccaaatcgcgtttttgatattgtgttggagtgttttgaactttatcctgaa
aatactacttgttacaatctcattcctatatttccaaagtcacatgctgctcagattttg
ggatttaagttccagtattatcaacgtatggacgtgaacacccctgttccttccagtctt
tatcggcttacagctttgctggtgaaagcaaactttattgatcttgataatatatatgca
cacttacttccaaaggatgatgaggcatttgagcactatgatgcatttattgcaaaacga
tttgatgaggtcaacaaaattggcaaaattaatcttgctgctacaggaaaagaccttatg
gatgatgagaaacaagatgtgactatcgatctgttttctgctttggacatggaaaatgat
gcgattacagaacgagcacctgaggttgaaaataatcagaaacttggtttgcttattggt
ttcctttctgttgatgactggtaccatgctcagatactcttttatcgtctgtcccatcta
aatcctgttcagcatatccgaatttgcgaagggttatttagggtcattgagaagactatg
tctgcggcctatgctattgtttatcaaacgcatcgtcaaagttgcgctggttccgatgtt
gtggaatcaacagctggatcttctatccagaattcttctgttgatctccctcaggaattt
ttccagatgcttgctgctgcaggaccatatcttcatcgggatgctgtacttcttcagaag
gtgtgcagagtgttgagagcatactacctttgtgctgaagaattagctggcctacgagct
aaacaagctaagcttagggttgaagaagcacttggaaaatgcgtgcttccatcattgcaa
ttaatacctgcaaatcctgcagttgggcaagtgatatgggaagtcctttctctgctcccc
tatgaggatcggtaccgcctgtatggtgagtgggagaaggatgatgaaagaatccccatg
attctggctgcaaggcagattgcaaagttggacactagaagaatattgaaaaggcttgcg
aaggaaaatttgaagcagctgggtcgcatggtggccaaacttgctcattctaaccctatg
actgtgcttcgcacaattgttcaccagattgaggcatacagggatatgataacaccggtc
gtagatgctttcaagtacttgagacagctggaatatgatgtgttagaatatgttgtaatt
gaacgtctagcacaaggtggacgtgagaagcttaaagatgatggcctgaatttgtcagat
tggcttcagtctcttgcatccttttggggccatctgtgtaagaaatacccttcaatggag
ttgagaggcctttttcagtatcttgttaatcaattgaagaagggctcaggaattgagctt
gttctgttgcaggagcttattcagcagatggcaaatgttcagtacactgagaacatgacc
gaggagcaacttgatgctatggcaggaggtgaaacattgagatatcaagctactctcttt
ggaatgactagaaacaataaggcattgactaaatctaccaacagacttagggactcctta
cttccgaaggaagagcctaagcttgctattcctcttttgttacttatagctcaacatcgc
tccatggtcatcataaatgctgatgcaccatacatcaaaatggttagcgagcagtttgac
aggtgccatggcacacttcttcaatatgttgagtttctcttgagtgccgtaactccatct
atgacctacgctcagctgtgtcctcctctagatgatcttgttcacaagtaccatcttgat
gcagaggtagcatttctggtatatcgccctgtgatgaggctcttcaaaagcataagtggg
gctgaaatatgctggcctcttgacataactgaagagccccatgctccaagtacaaataat
gaagcagagccctcaaatttatctagtgatgttgttttggatcttggttcaccctggaag
cttgtcaattggtcagacctccttgacacagtccggtcaatgctgcctctgaaagcttgg
aatagcctgtctcctgatctgtatgctacattttgggggcttaccctctatgatctttat
gttcctcgacaacgttatgaatcagagattatgaagcagcatgctgctattaaagcctta
gaagaactttctgacacttccaatatagctatcacaaagcggaaaaaagacaaggaaagg
atccaagagttacttgacagattgacttgtgaatttcaaaagcacgaacaacatgttgca
tctgtgcatcaaaggcttagtcgtgagaaggacaagtggctgagttcctgcccggatacc
ctaaagataaacatggagtttcttcaacggtgtatcttcccacgctgcatcttcagcatg
ccagatgctgtgtattgtgctatgtttgtgcatatgctacattcacttggcacaccattt
tttaacacggtcaaccatatcgatgttcttatatgtaaaaccctacagccgatgatctgt
tgctgcaccgaatttgaagctggcagacttggaaggtttttatatgagacactaaagatg
gcttaccattggaagagtgatgagtccatatatgaacgcgaatgtggaaacatgccaggg
tttgctgtctattacagattcccgaacagtcagcgtgtaacttatagccaatttattaga
gtacactggaaatggagcggaaggataactagattgcttgtacagtgcttggaatctacc
gagtacatggaaatacgaaatgctcttattgtgttgacaaagatatctagtgttttccct
gttactcgaaagagtggtattaatcttgaaaagcgggtagctaaaattaaaggggatgag
agagaagatttgaaagttttggctactggtgtagctgccgctttggctgctcgcaagagc
tcatgggtttctgaggaagaatttggtatgggtcatattgatctaaagcatgcagcatca
ccggcaaaatcacttgctggtaacctgggcaatgcgtcaaatggttctgctcttggtata
tctcagaatgagatgtctgggacaaggaatgccactacagggaatcaggtagcggatctg
ttgaatatagttagagaccagatgacacgtgcaaaatctacagatggcaggtccgatcga
tcagaaggtggaatgcttttgaaatctgattcagcacaacaaaaatcaaggagtagctct
tccacgaatgggcctgatagtcaaacacacacttcttctttgccacctaaaccttctggg
atcatgaaaaatccagatgaacttccaaaagtttcggcagaggaaacagttacaaaagtt
gcttcaaagggcgctgtggaatctgagaccagaccccagcaaaaacgttcagcacagaat
tctcttggtaggctaccaaaacaggagttggtcaaagaagatactaaatctggaaaatca
atcagcagaactgcctatcagcaatcttctgcaacagctgacagggatctttcagctcat
caatcagagagtaggcaaggtggtactgctactaattcttcgtccacttccaatggtaac
ttaagttcaacatcaggaaaagtagcaagttcctcctcaaaaatgaatgatgtgcatgtt
agtctatccaagatggaaagtggacctatcaaacccttggatgacaatgtagaagcacct
gatgctttccctaaacagcaaaagagatctgttccagctgaagaacaagatagattgaac
aaacgaaggaaaggagacactgatggaaaggatggtgaggctatggaagtgcgattatct
gataaggaaaaaacttttgaccccagatcaatggaaaaatctcactttccagatcatgag
aggcctacaattgaagaacaaagcccaattaggcctgtggataagcattctgataaatct
aaagacaaaactattgaaagatatgacaaagaccgcagggaaaaattggatcggcctgat
aagagccgtggtggggacattcttgagaaatcaagagataggtcaattgaaagacatgga
agagaacgttctgtcgaaagagtgcaggagagagcagtagataggaatatagataggtct
gttgataaatctagagatgacagaagcaaagatgacaggaataaactacgacacaatgag
gctcccatggataaggtgcattccgatgagcgttttcatggacaaggtttgccgccgcca
cctccgctacctccaagtttcgttccccaatctgttggtggtagtcgaagagatgaagag
cctgaaagaagggtcagtaacactagacacacacagcggctgtcgcctaggcatgatgaa
aaagaacgtatgcgctcagaggagaatgttttagcatcacatgatgatgcaaaacgtagg
agagatgatgagtttcgagaaaaaaagtgggaggaacgaggagatgcgccaaataaggta
gaagagagggacagagataaggggaatgtactgaaggatgatatggatcctactgcagcc
cccaagcggcgaaagcttaaaagggaccatacatcctcttctgaagctggaggggagtat
tcaccggttgttccgccacctccaccacctctagcattggggatatctcaatcgtttgat
gcaagagaaaggggagatagaaaagggattatggtgcagcatcgagctgtttatgtggat
gaagttccgaggatgcatggcaaagaagctgcaagcaagatcaatcgtcgggagactgat
cagatatatgaaagagagtgggaggaagagaagcaaaggactgaagctaagaggaagcat
cgcaagtag
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integrated database retrieval system
