Phoenix dactylifera (date palm): 103706489
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Entry
103706489 CDS
T03274
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103706489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103706489
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
103706489
mRNA cycle factors
Common to processing body (P body) and stress granule
103706489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
103706489
NCBI-ProteinID:
XP_008788823
UniProt:
A0A8B9ABM5
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Position
7:complement(7940174..7952168)
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AA seq
995 aa
AA seq
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MMTVPMDNSFSPSSRELAQRLYKKNIELENGLRKSAQSKVPSDPNIWLQMRENYEAIILE
DHDFSEKHEVEYALWQLHYRRIEEFRTHINAAVSAGSNAGKSLARPDRIKRIRSVFKTFL
SEATGFYHDLILKISSKYGLPLGYFSEGPENRYIPMKDEKKSAEMKKGLMSCHRCLIYLG
DLARYKGLYGEGDSVSRDYAAASSYYMQAASLCPSSGNPHHQLAILASYSGDDLVAVYRY
FRSLAVDNAFPTARDNLVIAFEKNRQSYSQLPGAKVPPSRALPTQSAGRGKGRADTSLPA
KDTKTESTPIEEREFSASEIFRAFSTRFIRLNGILFTRTSLETFGEIFSSVICNLHDLLS
SGPEEELSFGQDAAANALVIVRLIAILIFTVHNVNRDSEGQSYAEILQRTVLLQNAFTAA
FEFAGYIMKRCTQLHDAPSSSLLPAILVFIEWLACHPDIAAGFDVEEKQASARSFFWNQC
VSFMNKLILTGLVSIDGDEDETCFSDMSRYDEGETGNRLALWEDFELRGFLPLVPAQLIL
DFSRKHALGSDGSAKERRARVQRILAAGRALMNVVQVNHQRIYFDPYLKKFVLSTEPPAS
ESVVHADFSKAPESNVAKQGSQFKCTVDLGVAQSSTVNIGVRQPKALLYGEGGGGGGGEE
EEEEIVFKPIVAEKYPNATSSRSAAHELMQQPIQISSVNDWTMYGSRFSAPLDVQVSPLL
NASSHMHTIAPNVSQLPVQPINLDTSKWLMGQEAFLSDTLKNLNMTEGGFLAKQKVQEGP
NSLQPAAFSPFFSASANLNTLNMLSSQMKSVEVAIPSKLDSIVPSGATSDGIAMNPSAAL
PTAKKNPVSRPARHYGPPPGFSHVPSKQQEDAISNSVIKDQHLQIDDYSWLDGHRLSSIK
NMEEENSVNHMISAFPNVSATSSNAFTIANSFPFPGKQVSSMQTPVLNEKKWQDFQLFEH
VKSFSEEQLQQANPQHAQMPHQHQAQSLWSGHYFV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttccaatggataactcattttctccctcgtcaagggagcttgcacaacgc
ctttacaagaagaatattgaattggagaatggactacggaaatcagcacagtcaaaggtt
ccttcagaccccaatatatggctccaaatgcgtgagaactatgaggccataattctggaa
gatcatgatttttctgaaaagcatgaggtagagtatgctctttggcaattgcactacagg
agaattgaggagttcaggacacacatcaatgctgcagtatctgctggatctaacgctgga
aagagtcttgctcggcctgatcgaattaagagaatccgttctgtttttaaaacctttctt
tcagaagcaactgggttttatcatgacctgatactgaaaatcagttcaaaatatggcttg
cctttaggttacttctctgagggccctgagaatcgttatattccaatgaaagatgaaaag
aaatcagctgagatgaaaaaagggctgatgtcttgtcaccgctgtctgatttatttgggg
gatcttgctcgttacaaaggactgtatggggagggagactctgttagtcgtgattatgca
gctgcttctagttattatatgcaggcagcttctctttgtccttcaagtggaaatccacat
catcagcttgcaatattggcatcatactcgggcgatgatttggtagcagtctaccggtac
tttcggagtttggctgtggataatgcctttccaacagcaagggacaacttagttattgca
tttgagaagaatcgtcaaagttactctcagttgcctggggccaaggttcctccatctagg
gctttgcctacacaatcagctggcagaggtaaaggaagagctgatacaagtcttccagcg
aaagacaccaaaacagaatctactcctattgaagaacgagagttcagtgcatctgaaata
ttcagagccttttcaacacgatttattcgacttaatgggatccttttcacacggacaagc
ttggaaacttttggagaaatattctcttcggtgatttgtaatctgcacgatctcctttct
tctggtcctgaagaagagcttagttttggtcaggatgctgctgcaaatgcattggtcatt
gtgaggcttattgctattcttatattcacagttcataatgtgaatagggactcagaaggc
caatcatatgcagaaatcttgcagcgtaccgtgctgcttcaaaatgcttttacagctgct
tttgagtttgctgggtatataatgaagagatgcacacagctacatgatgctccatcaagc
tctctgttgccagccattttggttttcatcgagtggttggcatgccatccagatattgca
gcaggttttgatgtggaggaaaaacaagctagtgcaagatcattcttctggaatcaatgt
gtatctttcatgaacaaacttattctgactggacttgtgtcaattgatggtgatgaagat
gagacctgcttttctgatatgagcaggtatgatgaaggagaaactggtaacaggcttgca
ttatgggaagattttgagttgaggggatttttacccctagtgccagcacagctcattttg
gatttttcaaggaagcatgcacttggaagtgatggcagtgccaaggaaagaagagctcgt
gtccaaaggattcttgcagcaggaagggctcttatgaatgtggttcaggtcaatcatcag
agaatatattttgatccatacctgaagaaatttgttttaagtacagagcctccagcatcc
gaaagtgttgttcatgctgatttctctaaagcacctgaatcaaatgttgctaaacaagga
agtcaattcaagtgtacagttgatcttggagtcgcacaatcgagcacagttaacattggg
gtgagacagcctaaggcactgctatatggggaaggaggaggaggaggaggtggagaagaa
gaagaagaagaaattgtcttcaagccaattgttgctgagaagtatcccaatgcaacttcc
tcaagatcagctgctcatgaacttatgcagcagcctatacaaatttcttctgttaatgat
tggactatgtatggctcaaggttttctgcccctcttgatgttcaagtgtctcctcttcta
aatgctagttctcatatgcacacaattgcacctaacgtctcccagctacctgtgcaacct
atcaatctggacacctcaaaatggcttatggggcaagaagcatttttatctgatacactg
aagaacttgaacatgaccgaaggtgggtttttagctaagcagaaggtgcaagaaggcccg
aacagtttgcagcctgctgcattttcgcctttcttttctgcatctgctaatctaaatact
ctcaatatgctatctagtcagatgaaatctgtagaagttgccataccatctaaactcgac
tccatagtaccttcaggagcaacctctgatggcattgctatgaatccttcagcagcattg
cccacagcaaagaaaaatcctgtaagtcggcctgctaggcactatggaccccctccagga
tttagccatgtaccttctaagcaacaggaggatgccatttctaattcagttataaaggat
caacacctgcagattgatgactatagctggctggatggtcatcgattatcatccatcaaa
aacatggaggaggagaattctgttaatcatatgatatctgcgttcccaaatgttagtgct
accagcagtaatgcctttaccattgctaacagcttcccatttcctgggaaacaggtttct
agtatgcagactcctgtgcttaatgaaaagaaatggcaagattttcagctttttgaacat
gtaaagtcattctcggaagaacagcttcagcaggcaaatccgcagcacgctcagatgcct
catcagcatcaagcacaatctctctggtctggtcattacttcgtgtga
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