Phoenix dactylifera (date palm): 103707035
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Entry
103707035 CDS
T03274
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103707035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103707035
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
103707035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
103707035
NCBI-ProteinID:
XP_008789587
UniProt:
A0A8B7C1B0
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All DBs
Position
8:complement(31534166..31559276)
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AA seq
945 aa
AA seq
DB search
MEEDSAPPESSRKHKADALQALVSGPLAAAAGRLAGRSRGIPSGKDFHFYNNFDEFKAPA
REIAAKSESSLKGVAASGPLWGSKKPPPFPDDLDDAFDSLVNLNDEFLERFGISMDEFKS
LREKEEEKGRKISSMDLDGGFQMVYGKKKKGSKQESEKDVEDLALRSAAGVKAVSRDKKT
TAPRSRVPFHIPSIPRPQAKYNILVNNKNQPFEHVWLEKSEDGSRLIHPLEKLSVLDFLD
RNVGEGEPVKPLPVEGTPFKLVEGVNELKELAAKLWDLNEFAVDLEHNQYRSFQGLTCLM
QISTRTEDFIIDTLKLRIHVGPYLKEIFKDPSKRKVMHGADRDILWLQRDFGIYLCNLFD
TGQASRILRLERNSLEYLLHYFCGVNANKEYQNADWRLRPLPDEMLKYAREDTHYLLHIY
DLMKSRLISASTNENDLLLEVYKRSSEICMQLYEKELLTGTSYLHIYGLQEADFNSKQLA
VAAGLFQWRDSIARAEDESTGYILPNKTLLEIARQMPVTSVKVRRLVKSKHPFVERYIDT
VISIIRSSIANAAAFERIAVQLKKGRLEASPVQDMEAVSYNSDLVTTVGQDDHTVGTRNI
DTTKSAELAAGSTATVDDCAKLADSGLFSRPISAVSKCHQEEKSDIMSLSEVGCSLKLSD
TAGTMQKMDNGSTEHLQRARKASIASVQILKKPTCGFGALLGNSSSRRKFNADKGGNAEQ
VKNENKVEQIKSTVALPFHYFAGGEKLSEASPEVNLNHRQVENQQQCTGYITETMKLEEV
IPLENEPDNSLSAADSPKADDSGKHWEWFPPLQENGSGGGFQPESDNTEGLASPLDLSSG
FEKCFQSINDRRSSHQDHRPSPEPDVNHQLKPFNYAAARKNMKVGEVGEKDRAESDDRLP
TLPDSGELRKGSMFGQSRGEEVKGLQHPRRRQAFPPSGNRSTTYH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggactccgctcccccggaatcgtctcggaagcacaaggcggacgccctccag
gctctcgtctccggtcccctcgccgccgccgccggccgcctcgccggccgctcccgcggc
attccctctggcaaggacttccacttttacaacaacttcgacgagttcaaggccccggcc
agggagatcgcggccaaatccgagtcctccctgaagggcgttgccgcctcgggtcctctc
tgggggagcaagaagccgccaccattccccgacgatcttgacgacgccttcgactcgctc
gtcaacctgaacgacgagtttcttgagcggttcggcatctcgatggatgaattcaagagc
ttgagggagaaggaggaggagaagggcaggaagattagctcaatggacttggacggtggg
tttcagatggtttatgggaagaagaaaaaggggagcaagcaggaatcggagaaagatgtt
gaggatctggctttgaggtcggcggccggggttaaggcagtgtcgagagacaagaagact
acagcaccgcgctcgagggtgccttttcatataccgtccattcccaggccgcaagctaag
tacaatatcctggtaaacaacaaaaatcagccatttgagcatgtttggttggagaagagc
gaggatgggagtcggctcatccatccactggagaagctgtccgtgttggactttcttgat
agaaatgttggggaaggtgagccagttaaacccctccctgtagagggtaccccatttaag
cttgtggagggggtgaacgagttaaaggaactagctgccaagttgtgggatttaaatgaa
tttgcggttgatttggagcacaaccagtataggtcatttcaaggactgacttgcttgatg
caaatttctacaagaacggaggattttataatagacaccttgaaattgcgcattcatgtt
ggtccatacctaaaagaaatcttcaaagacccctcaaagagaaaggtcatgcatggggca
gaccgtgacatattatggcttcaacgggactttggcatatacttgtgcaacctctttgat
acagggcaggcatcaagaattttgcggttggagagaaatagtctggagtatctcctgcat
tacttttgtggagttaatgcaaataaagaatatcagaatgcagattggagattgcgccca
cttcctgatgaaatgctcaagtatgccagagaagacacacactatctcctgcatatatat
gatttaatgaaaagtaggttgatatcagcatctacaaatgaaaatgatcttcttttagag
gtctacaaacgtagcagtgaaatttgcatgcagctttatgaaaaagaactcttgaccggc
acatcatatctccatatatacgggttacaggaagctgatttcaactcgaagcaacttgct
gtcgctgctgggctatttcaatggagagatagtattgcccgtgcagaggatgagagcact
ggctacatattgccaaacaaaactctacttgagattgcaaggcagatgcccgtcacttct
gtaaaagtacgccgcttggtgaaatcaaagcacccatttgtcgagcgctatattgacact
gttataagcattattaggagttcaattgcaaatgctgctgcttttgagagaattgctgtg
cagctgaagaaagggcgactggaagcttcgcccgtgcaagatatggaagcagtcagctac
aattctgacttggtcaccaccgttggtcaagatgatcatactgttggtactaggaacatc
gataccactaagagtgctgaattggctgcaggttccacagctactgtagatgattgtgcc
aaacttgcagattccggacttttcagtagacccatttctgcggtgagcaaatgtcatcaa
gaggaaaaatcagatattatgtcattgtcagaagttgggtgttcactcaagctatctgac
acagctggaacaatgcagaagatggataatggaagcaccgagcatttacaacgtgctagg
aaagctagcattgcttcagtccaaatattgaaaaagccaacttgcggttttggagcgctg
ttaggaaattcatcttccaggagaaagtttaatgctgataaaggagggaatgctgaacag
gtcaagaatgagaacaaagtagagcagataaaatcgacagtagcccttccattccattat
tttgcaggtggagaaaaactttctgaggcgagtcctgaggtgaacctcaaccatcgacag
gtggagaatcagcagcagtgtactggctatatcaccgagacgatgaaattggaagaagtc
ataccattggagaatgagccagacaattcactgtctgctgcagatagcccgaaggctgat
gatagtgggaagcactgggaatggttccctcctctccaagaaaatggcagcggtggaggt
tttcaaccagaatctgataatacggaagggctggcatcgcccttggatctttcgtccggt
tttgagaaatgctttcagtcaatcaatgacaggagaagctctcatcaggaccataggcca
tctccagagccggatgttaaccatcagttgaagccattcaactatgctgctgctaggaaa
aatatgaaggttggagaggtcggagaaaaggatagagctgaaagtgatgatcggcttcca
actttaccagattcaggtgagctgcgtaaaggctcgatgtttggtcagtctcgaggtgaa
gaagtgaagggccttcagcatcctcggcggcgccaggcttttccaccttcaggcaacaga
agcacaacatatcactag
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