KEGG   Phoenix dactylifera (date palm): 103707248
Entry
103707248         CDS       T03274                                 
Name
(RefSeq) sm-like protein LSM4 isoform X2
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03018  RNA degradation
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103707248
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103707248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103707248
   03041 Spliceosome [BR:pda03041]
    103707248
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103707248
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103707248
Spliceosome [BR:pda03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103707248
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 103707248
NCBI-ProteinID: XP_008789882
UniProt: A0A8B7C1Y7
LinkDB
Position
13:complement(1661405..1668408)
AA seq 146 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETTKSRSDRKPPGVGRGRGRGREDGGSGRSAKGIGRQED
GGKGGRGKGGAGGKGGGGRGGGRGRG
NT seq 441 nt   +upstreamnt  +downstreamnt
atgcttccgctatcactcctgaagacggcccaagggcatcccatgctggtggagctgaag
aacggggagacgtacaatggacacttggtgaactgtgatacctggatgaacattcacctc
cgtgaggtcatttgtacctcaaaggatggagacaggttttggaggatgcctgaatgctat
attcgagggaataccattaaatatcttcgcgttcctgatgaggtcattgacaaagttcaa
gaagaaaccaccaagagccgttcagacaggaaaccacctggtgttggccgtggaagggga
agaggtagagaggatggcggcagcggtaggtcagccaaaggcattggacgtcaggaagac
ggtggcaaaggtggtcgtggcaagggtggagctggtggtaaaggtggcggcggcagaggc
ggcgggcgtggccgtggttga

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