Phoenix dactylifera (date palm): 103707248
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Entry
103707248 CDS
T03274
Name
(RefSeq) sm-like protein LSM4 isoform X2
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103707248
09123 Folding, sorting and degradation
03018 RNA degradation
103707248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103707248
03041 Spliceosome [BR:
pda03041
]
103707248
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103707248
mRNA degradation factors
5'-3' decay
Lsm complex
103707248
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103707248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
103707248
NCBI-ProteinID:
XP_008789882
UniProt:
A0A8B7C1Y7
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Position
13:complement(1661405..1668408)
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AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETTKSRSDRKPPGVGRGRGRGREDGGSGRSAKGIGRQED
GGKGGRGKGGAGGKGGGGRGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctatcactcctgaagacggcccaagggcatcccatgctggtggagctgaag
aacggggagacgtacaatggacacttggtgaactgtgatacctggatgaacattcacctc
cgtgaggtcatttgtacctcaaaggatggagacaggttttggaggatgcctgaatgctat
attcgagggaataccattaaatatcttcgcgttcctgatgaggtcattgacaaagttcaa
gaagaaaccaccaagagccgttcagacaggaaaccacctggtgttggccgtggaagggga
agaggtagagaggatggcggcagcggtaggtcagccaaaggcattggacgtcaggaagac
ggtggcaaaggtggtcgtggcaagggtggagctggtggtaaaggtggcggcggcagaggc
ggcgggcgtggccgtggttga
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