KEGG   Phoenix dactylifera (date palm): 103708149
Entry
103708149         CDS       T03274                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103708149
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pda03041]
    103708149
Spliceosome [BR:pda03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    103708149
 Complex C
   U5 SnRNP specific factors
    103708149
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_EIPR1 Beta-prop_SPT8 NBCH_WD40 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 eIF2A Beta-prop_HPS5 Beta-prop_Nup120_160 Cytochrom_D1
Other DBs
NCBI-GeneID: 103708149
NCBI-ProteinID: XP_008791157
UniProt: A0A8B7C3S0
LinkDB
Position
4:complement(21251803..21260071)
AA seq 438 aa
MNPAPVSVCRLVLLVLSPSLCALASSPLSIPRRRRPRFGRQLPTPDRRPTPDSRQTTGDR
RPATGELPALWTNPFPSAFVLGEAIQLCIHQVEDKMLAASSDNALAVAGPRPGNELTAVP
QSFQAPGPRGQQWTSSLESPIMLLTGHHSAIYTMKFNPAGTVIASGSHDKDIFLWFVHGD
CKNFMVLRGHKNAVLDLQWTTDGNQIISASPDKTLRAWDVETGKQVKKMAEHSSFVNSCC
PARRGPPLLVSGSDDGTAKLWDLRMRGAVQTFPDKYQITAVGFSDPADKIFSGGLDNDVK
VWDLRRNEVTMTLQGHGDMITGMQLSPDGSYLLTNGMDCTLRIWDMRPYAPQNRCVKIFA
GHQHNFEKNLLKCSWSPDGSKVTAGSADRMVYIWDTTTRRILYKLPGHNGSVNETAFHPT
EPIIGSCSSDKQIYLGEL
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgaacccggcgcccgtgtctgtatgtcggttggttcttctcgttctctctccgagtctt
tgtgccctagctagttcccctctctccatccctcgccgccgacgtccgcgcttcggccgc
caattaccgacccctgaccgccggccgacccccgacagccgacagacgaccggcgaccgg
cgaccggcgaccggcgagcttccagccctgtggaccaacccgtttccatcagcttttgtc
ttaggtgaagcaatacagctttgtatacatcaagtggaggacaagatgctcgctgcatct
agtgacaatgcattggccgttgcaggcccaagaccaggaaacgaattgactgctgttcct
caatcctttcaagctccaggtccacgtggacagcagtggacctctagtcttgagtcacca
atcatgctgctcacaggtcaccacagtgctatatataccatgaagttcaaccctgcagga
actgtgatagcatctggatcccatgacaaagatatcttcttgtggtttgtccatggggac
tgcaaaaatttcatggtcttgagaggacacaagaatgcagttttggacctccagtggacc
accgatggaaaccagataatctctgcaagccctgacaagactcttagagcatgggatgtg
gagacaggaaagcaagttaagaaaatggcggagcactcatcttttgtgaactcgtgctgc
cccgcacgcaggggtccacctcttcttgtgagcggctcggatgatgggacagccaaactc
tgggaccttcgtatgaggggtgcagtccagacatttccggacaagtatcagatcacagct
gtcggtttctcagatccagcggataagatcttctctggtgggttagacaatgatgtgaag
gtgtgggatcttcgcagaaatgaggtaaccatgactctccagggccatggggacatgata
acaggcatgcagctgagtcctgatgggtcttatctcttgactaatggcatggactgcaca
cttcgtatatgggatatgcgcccctatgctccacagaaccgatgtgtgaaaatttttgct
gggcaccagcacaactttgagaagaacctcttaaaatgcagctggtcacctgatggaagc
aaggtcactgcagggagtgcagaccggatggtttatatctgggacacgacaacacgccga
atcttgtacaagcttcctgggcacaatggatctgtcaatgagactgcgtttcatcctacc
gaacccattattggatcttgcagcagcgacaagcagatctatcttggagaactttaa

DBGET integrated database retrieval system