Phoenix dactylifera (date palm): 103708171
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Entry
103708171 CDS
T03274
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103708171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103708171
03009 Ribosome biogenesis [BR:
pda03009
]
103708171
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103708171
Spliceosome [BR:
pda03041
]
Complex A
U1 snRNP components
U1 related factors
103708171
Complex B
103708171
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
Helicases
103708171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103708171
NCBI-ProteinID:
XP_008791195
UniProt:
A0A8B7C428
LinkDB
All DBs
Position
4:17384218..17398489
Genome browser
AA seq
860 aa
AA seq
DB search
MTASASALSSGPRYAPEDPRLPKPWKGLVDGSTGYLYYWNPETNVTQYERPVADLPAPPP
LLLPLPSHPPPKSGSVAVSSTVLQSHHQKQRKRERDSHDDDGRYGRSRSSHQHGGGRGSS
SHNRGYGAKDSQDSRMASARGHRSSSDGRGSVSVEAYRHQHEIIVTGDDVPAPYMTFESA
GFPSEILKEVHHAGFSVPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFMHLKRL
CNNFKMGPTVLVLSPTRELATQIQDEAVKFGRASRISCTCLYGGAPKGPQLRDLDRGVDV
VVATPGRLNDILEMRRVSLCQVSYLVLDEADRMLDMGFEPQIRKIVKEIPNRRQTLMFTA
TWPKEVRKIAADLLVHHVQVNIGSIDDLVANNAITQYVEVITPMEKLRRLEQILRSQDPG
SKILIFCSTKRMCDQLARTLTRQFGAAAIHGDKSQGERNRVLNQFRTGRSPILVATDVAA
RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVSYTFFCDQDSKYAADLVKVLEG
ADQHVPKELWDMVSRGGYGGKSRRWGSRSVARDGGCPRGRSDISYRGRDVHGLLPSGRAD
SGRGSHGRDVLEPPRDRYGHGYQDGHEVEIRDRKSRGKCRSRSRSLSWNNSQRYSPSPVK
GRVGWGNSCSRSWNHGHSRSRSRSRSPSRGIDQYGDRHGEEAGQTLRESPVSRRRVPSPI
NDQIGNPVDSSKMPSYEDQRGSPPYNGEDMERVQPDRSPSVQNETSECLYSNIDNGKQGI
SANPAQWHRGSPWDHGDAEGPNEGSVRSPLVPCNRSGEEEEEGMIPADGEDGVMPFEEGT
TSPKMAAAEQPESSIDNIEN
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgtcggcatcggctttgtcgagcgggccgaggtacgccccggaggacccgagg
ctccccaagccctggaagggcctggtggacgggagcacgggctacctctactactggaac
ccggagaccaacgtcacccagtacgagcggcccgtcgccgatctcccggctccccctcct
ctgctgctgcctctcccttctcatcctcctccgaaatctggttccgtcgccgtcagctcc
accgtccttcaatcccaccatcagaagcagaggaagcgggagcgggactctcatgatgat
gatggccgctacggccgctctcgcagcagccatcagcatggaggtggcagaggtagcagc
agtcataaccgtgggtatggtgcaaaggattcacaggattcgaggatggcatctgccaga
ggtcatagatcatcgtcggatgggagaggttctgtgtctgtggaagcatatcgccatcag
catgaaataatagtcactggagatgatgtaccagcaccatacatgacatttgagtcggca
ggctttccctcagaaattctaaaagaggtacaccatgcgggtttctctgttcccactcct
attcaggctcagtcttggccaattgcattacaaagtcgtgatattgtagccattgcaaag
acaggatcaggcaaaacacttggttatcttattccagggttcatgcatcttaagcgcctc
tgtaacaactttaaaatgggtccaacagtattggtcctatcaccaactagggagctggca
acgcagatacaagatgaagctgtgaagtttgggagagcatcaagaatttcgtgcacgtgt
ttatatggaggtgccccaaaaggtccccagttgagggatttagaccgaggtgtagatgtt
gtggttgcaactccaggaagactgaatgacattttagagatgagaagagtaagcctctgt
caggtgtcatatctggttcttgatgaggctgaccgaatgctggacatgggttttgagcca
cagataaggaaaattgtgaaagagataccaaatcgtcggcagactcttatgtttactgct
acctggccaaaggaagttaggaaaatagctgcagatctacttgttcatcatgttcaggtt
aacattgggagcatagatgatcttgttgcgaacaatgcgatcacgcagtatgtggaagta
atcacacctatggaaaaactcagacggttggaacagatattgcgatcccaagatccaggg
tctaagatcttaatattttgctcaacaaagaggatgtgtgaccagcttgctaggaccctc
actcgtcagtttggtgcagctgctattcatggtgacaagtctcaaggtgagaggaacagg
gttttaaaccaatttcgaactggaaggtcccccatactagtagctactgatgttgctgct
cgaggcttggacatcaaagatatcagggttgtggtcaactatgatttccccacgggtgtt
gaagactatgttcacaggattggcagaactggtagggcaggtgccactggtgtgtcttac
acgttcttctgcgatcaggactcaaagtatgcagcagatcttgtcaaagttctggaaggg
gcagaccagcatgttcccaaggagttatgggacatggtttcacgtggtgggtatggtggg
aagtcccgccgttggggttctcgctctgttgctcgtgatggtggctgcccgcgtggacgt
agtgatattagttataggggaagggatgtgcatggcctgctaccatccggtagagcagat
agtggccgtggcagtcatggacgcgatgttctcgagcctcctcgtgatagatatggtcat
ggatatcaagatggtcatgaggtagagattcgtgaccgcaaatccagaggtaaatgccgt
agccgcagtcgcagccttagctggaataacagccagaggtacagcccgagccctgtgaag
gggcgtgttgggtggggcaatagctgcagcaggagctggaaccatggccacagtcgaagc
aggagccgtagtcgcagtcctagccgtggcatcgaccaatatggtgaccggcatggtgag
gaggctgggcaaacacttcgggaatcaccagtatcaaggagaagagtgccttcaccaatc
aatgatcagattggcaatcctgtcgattcatcaaaaatgccatcttacgaagatcagagg
ggatcacctccatataacggtgaggacatggaaagggttcaaccagatcgctcacctagc
gttcagaatgagacatctgaatgcctgtatagtaatattgacaatggaaagcaaggaata
tcagctaacccagcacagtggcatcgaggatctccatgggaccatggggatgctgaaggg
cctaatgagggatcggttcgatcaccgttagtgccatgcaataggagtggggaggaagaa
gaggaaggaatgattcctgctgatggagaggatggtgtgatgccctttgaagagggtaca
acatcgcctaaaatggcggcagctgagcaacctgagtcatcaattgataatatcgaaaat
taa
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