Phoenix dactylifera (date palm): 103709113
Help
Entry
103709113 CDS
T03274
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103709113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103709113
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103709113
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103709113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
103709113
NCBI-ProteinID:
XP_038980791
UniProt:
A0A8B9A2F9
LinkDB
All DBs
Position
3:complement(18113232..18133465)
Genome browser
AA seq
661 aa
AA seq
DB search
MSGLLNSGQSGSASNLSDSIGRPFATSFSAQSATVPGFHHSGGMQGLHNIHGSFNVPNMP
SSLASRNAAMSGVPSSAVQQPGGSISSGRFASNNIPFAMSQLSHEHSGVTSRGGINVVGN
LAFSNSTNGVGGSVPGISSNSASAGNRTSVPGIGVSPILGNLGPRITGSVGNVVGGSNTG
RSISSGGLSVPGLASRMNLTANTGNGSLNVQGSNRLMSGILQQAPQMIGMLGNSYPTSGG
PLSQSQVQTGNHSLSSVGMLHDVNSSDNAPFDINDFPHFMGRPSSAGGPQGQLGSLRKQG
IGVGSIVQKSQEFSIQNEDFPALPGYKGNSSDFSMDLQQKEQVHDNMSMIQSHHLPMARS
PAFNLGGTCPPNRQQQQQQNASSVNNGGVFAPGNNQDLLHMHGSDLFPSSHGTYHSPVQN
TGPPSIGLRPLNSPNTASSLGTYEQLIQQYQQPQNQSPFHLQQMSAVSQLYRDQSVKSMQ
GTQPPPDRFGLLGLLSVIRTNDPDLTSLALGIDLRRLGLNLNSSDNLHKTFGSPWSDEPA
KGEPEYCIPTCYDAKQPPPLQQGHFSKFQRDTLFYIFYSMPKDEVQLYAANELYSRGWFY
HRELRLWLTRIPHVEPLVKTQTYERGSYLCFDPNMWKIIHKDNFVLQYEAIEKPTLPPSH
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttgcttaattcaggccagagtggttcagcttcaaatctctctgactccata
ggcagaccttttgcaacatctttttctgctcaatctgcaacagttcctggttttcatcac
tctggtggtatgcaaggactgcacaacattcacggtagcttcaatgttccaaacatgcca
agctcacttgcatcacggaatgcagcaatgagtggtgtaccatctagtgctgttcagcaa
cctgggggaagcatttcaagtgggagatttgcgtcaaataatattccatttgccatgtct
cagctttcacatgaacattcgggtgtcaccagtagagggggcatcaatgtagtagggaac
cttgcttttagtaacagcacaaatggagttggtggttcggtacctgggatttcctcgaac
tcagctagtgctggtaaccgtacttctgttcctgggattggagtttctccaattttggga
aatttaggtccccgaatcacaggctcagtcggcaatgttgttggtggaagcaacactgga
agaagcataagctctggaggattatctgttcctggtcttgcatcacgtatgaatttaact
gccaatacgggaaatggaagtctaaatgtgcaaggttctaataggttgatgagtggcatt
cttcaacaagcaccacagatgattggtatgcttggaaattcttatcccacatctggagga
ccattatctcagagccaagtccaaacaggaaatcattcattaagctctgtggggatgtta
catgatgtaaactctagtgataatgctcctttcgacataaatgattttcctcatttcatg
ggtcgtcctagttctgctggaggacctcaggggcaattgggttcactgcgaaagcaaggg
attggggttggctctattgtacaaaagagccaggaatttagcatacaaaatgaagatttt
ccagctttgcctggatataaaggcaatagctcagatttttctatggatttgcagcagaag
gaacaagttcatgataacatgtccatgatccagtcacatcacctacctatggcaagatcc
cctgcttttaacttaggagggacctgcccgcctaaccgtcaacaacaacaacagcagaat
gcttcttcagtcaacaatggtggagtctttgcacctggaaataaccaagatctactacat
atgcatggctctgatctgtttccatcctctcatggaacctatcactctccggttcagaac
actgggcctccgagcattggattgagacctctgaattctcccaatactgcttctagttta
ggaacttatgagcagcttattcagcagtatcaacaaccacagaatcaatctccatttcac
ttgcaacaaatgtctgctgtttctcaattatatagagatcagagtgtgaagtccatgcag
gggacacaacctcctcctgatcggtttggcttgctgggtttgttaagtgtaataaggaca
aatgatccagatctgacatcccttgccttagggattgacctgaggagattaggattgaat
ttgaactcatcagataatcttcataagacatttggttccccatggtctgatgaacctgcc
aaaggagagcctgagtattgcattcctacttgctatgatgccaaacaaccaccaccacta
cagcaagggcatttttcgaagtttcagagagacacactattttacatcttttacagcatg
ccgaaagatgaagttcaattgtatgctgccaacgaactatattctcgaggatggttttac
catagagaactccggttgtggctcacaagaattccacatgtggagccacttgtcaagact
cagacttatgaaaggggatcctacctctgttttgatccaaatatgtggaagataatccat
aaggacaattttgttctccaatatgaggcaatagagaagccaacacttcctccaagtcac
gcttaa
DBGET
integrated database retrieval system
