KEGG   Phoenix dactylifera (date palm): 103709297
Entry
103709297         CDS       T03274                                 
Name
(RefSeq) histone deacetylase 6-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03082  ATP-dependent chromatin remodeling
pda03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103709297
   03083 Polycomb repressive complex
    103709297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pda03036]
    103709297
Enzymes [BR:pda01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103709297
Chromosome and associated proteins [BR:pda03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103709297
   HDAC complexes
    Sin3A-HDAC complex
     103709297
    BRAF-HDAC complex
     103709297
    REST complex
     103709297
    SHIP complex
     103709297
    MiDAC complex
     103709297
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103709297
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103709297
  Chromatin remodeling factors
   NuRD complex
    103709297
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103709297
NCBI-ProteinID: XP_008792799
UniProt: A0A8B7C6H7
LinkDB
Position
11:15044243..15050706
AA seq 444 aa
MSMSGSGGPYGEGEGASLAASSGPDAKKRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHN
LVVHYSLHRLMEVCRPFPASADDIRRFHSDDYVDFLSTLASSDSRLFKRFNVSEDSPVFD
GLFQFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKCEASGFCYVNDIVLGILELL
KFHKRVLYVDIDVHHGDGVEEAFFTTDRVMTVSFHKYGDFFPGTGHIKDIGFGQGKYYAL
NIPLNDGMDDDSFRGLFRPIIQRVMQVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADC
LRYLRSFNVPLMVVGGGGYTMRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYNLH
IEPKNLENQNSPQDLERMRNVLLEHLSKIQHVPNVQFQARPPDTETPEEEDEDMDCRPRR
QRLSGECYDSEPEEAKSLNMDKLA
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgtccatgtccggatccggggggccgtatggggagggggagggagcgtcgctggcggcg
tcgtcgggtccggacgcgaagaagcggcgggtgagctacttctacgagccgagcataggg
gactactactacgggcaggggcacccgatgaagccccaccgcatccggatggcccacaac
ctggtcgtccactactccctccaccgcctcatggaggtctgccgccccttccccgcctcc
gccgacgacatccgccgcttccactccgacgactacgtcgacttcctctccaccctcgcc
tcctccgactcccgcctcttcaagcgcttcaacgtcagcgaggactcccccgtcttcgac
ggcctcttccagttttgccaggcctccgccggcggctccatcggcgccgccgtcaagctt
aaccgcggcgacgccgacatcgccatcaactgggccggcggccttcaccacgccaagaag
tgcgaggcctccggcttctgctacgtcaacgacatcgtcctcggcatccttgagctcctc
aagttccacaagcgtgtgttgtatgtagacattgatgtccatcatggagatggtgttgaa
gaggcttttttcacaactgatagagtcatgactgtttcattccataaatatggggacttc
tttccagggacggggcatatcaaggacattggttttgggcaaggaaagtactatgctctg
aatattcctttgaatgacggaatggatgatgatagtttccgtggactatttagacctatt
atccaaagggtaatgcaggtttatcagcctgatgcagttgttctccagtgtggtgcagat
tccttggctggagataggctaggttgcttcaacttgtcagtgaaggggcatgccgattgt
ctacgatatctcagatcttttaatgtacctctgatggttgtgggaggtggaggttatacc
atgaggaatgttgctcgctgctggtgctatgagacagcagttgcagttggagtggaacca
gataataagctgccatataatgaatattatgagtactttggtcctgactataatcttcat
atcgaaccaaaaaacttagagaatcagaactctccacaagatctcgagagaatgaggaat
gttttgttggagcacctttcgaagatacaacatgttccaaatgtacaatttcaggccaga
cctccagatacagaaacccctgaggaggaagatgaggatatggattgcaggccacggcgt
caacgattgagtggtgaatgttatgattctgaaccagaggaggccaaaagcctcaacatg
gacaaactagcataa

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