Phoenix dactylifera (date palm): 103709691
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Entry
103709691 CDS
T03274
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103709691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103709691
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103709691
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103709691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
103709691
NCBI-ProteinID:
XP_008793379
UniProt:
A0A8B7C7G8
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Position
13:complement(8216458..8226605)
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AA seq
660 aa
AA seq
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MSGLLNSTLNGSTSNLPDSTGRPFTSSFSAQSATSPGFHHSGGLQGLHNIHGNFNIPNMP
SSLASRNAAMTGVPSSGVQQPGGNISSGRFASNNIPVALSQISHGSGITNRGGINVVGSP
AFSSSMNGVGGSIPGIPSSSAAAGNRSSVPGLGVSPILGSVGPRITSSMGNMVGGGNMGR
SISSGGLSVPGLASRVNFAANSGSGNLNVQGPNRLMGGMLQQAPQMLGMLGNSYPTSGGP
LSQSQVQGGNNALNSMGMLSDVNSNDNSPFDMNDFPQLTGRPSSAGGPQGQLGSMRKQGV
GVSSIVQQSQEFSIQNEDFPALPGFKGGSSDYSVDLHQKEQLHENVPMMQSQHFSMARSS
GFSLGGTYPSNRQQQQQHAGAVSSAGVTYAHGSNQDLIHLHGSDLFPSSHGTYHSQMQNS
GPPSIGFRPLSSPNAASSMGAYEQLIQQYQHPQNQSQFRLQQMSAVNQSYRDQSLKSVQG
IQSAPDRFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSSDNLHKTFGSPWSDEPAK
GEPEYCIPTCYYAKQPPSLQQGHFSRFHLLTLFYIFYSMPRDEAQLYAASELYSRGWFYH
KEHQLWFTRANVEPLVKTQTYERGTYVCFDPNTWETRTKENFVLQYEAVEKKPTLPSARP
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggttgcttaattcaacacttaatggttcaacatcaaatctccctgactcgact
ggcaggcctttcacatcttctttttctgctcagtctgcgacatctccaggttttcatcac
tctggtggtctgcaagggctacacaacattcacggaaacttcaacattcccaacatgccg
agctcactcgcatctaggaatgcggcaatgacgggtgtcccatcaagtggtgttcagcaa
cctggaggaaacatatctagtggacgattcgcgtcaaacaatataccagttgctttgtct
cagatttctcatggttctgggataaccaatagagggggcattaatgttgtaggaagccct
gcttttagtagtagtatgaatggggttggtggttcaatacctgggattccctcaagttct
gctgctgctggcaaccgtagttctgttcctgggttgggtgtatctccaattttggggagt
gtaggtcctcgaataacaagctcgatgggaaacatggttggtggaggtaacatgggaaga
agcataagctctggaggattatctgttcctggcctcgcttctcgtgtaaattttgctgct
aatagtggatcagggaatcttaatgtacagggacccaacaggttgatgggtggcatgctt
caacaagcacctcaaatgctcggtatgcttggaaactcttatcctacatctggaggacca
ttatctcagagtcaagtacaaggagggaataatgcattaaactctatgggaatgttaagt
gatgtcaactccaatgataattctccttttgacatgaatgattttcctcaattgactggg
agaccaagttcagctggagggccacaaggacaattgggttcaatgcgcaagcaaggagtt
ggtgttagctccattgtccaacaaagtcaggaatttagcatccaaaatgaagattttcca
gctttgcctggatttaaaggtggcagctcagattattctgtcgatctgcatcaaaaggaa
cagcttcatgagaatgttccgatgatgcagtcacagcacttcagtatggcaagatcttct
ggatttagcttagggggaacttacccatctaaccggcagcaacagcagcagcatgctgga
gcagtcagcagtgctggtgttacatatgcgcatggaagcaatcaagatcttatccatcta
catggctctgatctgtttccatcttctcatggaacctatcactcccagatgcaaaatagt
gggccacctagcattggatttagaccattaagttccccaaatgcagcttctagtatggga
gcatatgaacagctcattcagcaatatcaacacccacagaatcaatctcaatttcgactg
caacagatgtctgctgttaatcaatcttacagagatcagagtctgaagtccgtgcagggg
atacagagtgctcctgatcggtttggcttattgggtttgttaagtgttattaggatgaac
gatccagatctgacatcacttgctttgggaattgatttgacaacattagggttgaatttg
aactcatcagataatcttcataagacatttggatctccatggtctgatgaaccagccaaa
ggagagccagagtactgcattcccacctgttattatgccaaacaaccaccttcactacag
caaggacatttttcgcggtttcatctattaacactgttttacatcttttacagcatgcca
agagatgaagctcaactgtatgctgcttctgaactatattcacgagggtggttctaccat
aaagagcaccaattatggttcacgagagcaaacgtggagcctctggttaagactcagacg
tatgaacggggaacctatgtctgtttcgatccaaacacatgggaaactagaactaaggaa
aattttgttctccaatatgaggcggtggagaagaagccaactcttccttctgcgcgccct
taa
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