Phoenix dactylifera (date palm): 103710234
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Entry
103710234 CDS
T03274
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda04120
Ubiquitin mediated proteolysis
pda04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103710234
04120 Ubiquitin mediated proteolysis
103710234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pda04121
]
103710234
Enzymes [BR:
pda01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103710234
Ubiquitin system [BR:
pda04121
]
Ubiquitin ligases (E3)
U-box type E3
103710234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
103710234
NCBI-ProteinID:
XP_008794111
UniProt:
A0A8B7C8Q3
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All DBs
Position
6:complement(14567788..14586772)
Genome browser
AA seq
1041 aa
AA seq
DB search
MAARKPQRTPEEIEDIILRKIFLVSLANPVENDPKVVYLELTAAEILSEGKPLMLSRDSM
ERVLIDRLSGDFPGAESTFPYLIGCYRRAYEEGRKVASMKDPSVRLEIESAVRQVRKLVV
SYCRIHVGNPDMFVPTGGDGVSVTSQLLSLIFSEVSSPMDGFGGNSLGGELRCPPGFLEE
FFRDADAESLEPIMLDLFEKLRQSVDRVSALGNFQQPLRALLLLAGFPNCAKALVNHPRW
IPKETYLLTGEGRVIEIASILGAFLHVSALPDYKEFKSKPDVGQQCFSEASTRRPADLLS
SYTTIRTVMNILYDGLGEVFLALLKNVDTRDKVLEYLAEVIKXNSARSRMQVDPILCASS
GTFVNLSAVMLRLCEPFLDAATTKRDKIVANYLFYNNRLDFKQLTAMHASSEEVTAWIDN
GNWERTDGHVNNFGEDNHVLESQEATSSGGNSGNCALSKAKPLMGCSRKNKFSFICECFF
MTARVLNLGLMKALSDFKHLAQELARYEEDLSTYKALRDQGTSPQLEADIKRLEKAIEIL
SQDKICYEAQILRDGALLQHALSFYRLMVVWLVGLVGGFKMPLPSKCPMEFACIPEHFVD
DAMDLLILTSRIPRALEGFVLDDFLNFIIMFMASPSYIKNPYLRAKMVEVLNCWMPQRSG
LSSTASLFEGHQLSLDYLVRNLLNLYVDIEFTGSHTQFFDKFTIRHNIAELLEYLWNVPS
HRNAWRQIAREEEKGVYLNFLNFLINDSIYLLDESLNKILELKEMEAEMANSAEWERRPA
QEREERMRLFHSRENIVRFDMKLANEDVGMLAFTSEQIPSPFLLPEMVERVANMLNYFLL
QLAGPQRKSLSVKDPEKYEFKPKQLLKQIVEIYVHIARGDKENIFPAAISKDGRSYNEKL
FASVATILWKIGEDGRVIQEFVQLGVKAKEAAAEAMDTEAALGEIPDEFLDPIQYTLMKD
PVILPSSRVTIDRPVIQRHLLSDNTDPFNRSHLTQDMLIPDTELKLRIEKFVRSQARKHR
QRTSITEGAAEQADGVTYMEE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaggaaaccccagcgaaccccggaggagatcgaagacatcatccttcgcaag
atcttcctcgtttccctcgcaaaccccgtcgaaaatgaccctaaagtcgtctacttggag
ctcaccgccgccgaaatcctcagcgagggcaagcccctcatgctttcgcgggactccatg
gagagagtcctcatcgatcgcctctccggcgacttcccgggtgccgagtccaccttcccc
tatttgatcggctgctatcgccgggcctatgaggaggggaggaaagtggcctcgatgaag
gacccatcagtccgattggagattgaatccgctgttagacaagttcgcaaattggtcgtc
tcctattgcaggattcacgttgggaatcctgatatgtttgtgcctacaggtggagatggt
gtttctgtgacttcgcagctcctgtcgttgatcttctcggaggtttcgagcccgatggat
gggttcgggggaaacagcttgggcggggagttgagatgcccgccgggatttttggaggaa
ttcttcagggatgcggatgcggagagcttggagccgattatgttggatttgtttgagaaa
ttgaggcagagtgtcgatcgggtttcagcactaggaaactttcagcagccattaagagcg
ctgctgttgttagcgggctttccaaactgcgccaaggctttggtgaatcaccccaggtgg
atcccaaaagagacttacttgctgactggggagggtcgggtgattgagatagcgagcatt
ttaggagcttttcttcatgtcagcgcactgcccgactacaaggagtttaagagtaaacca
gatgttggtcagcaatgcttctctgaagcatcaacgcgccggccagctgatttattatca
tcttacacaacaatcaggacagtcatgaatattttatatgatggccttggagaagttttc
cttgccctactgaaaaatgtggatacacgggacaaagttcttgaatatcttgctgaagtg
attaaanaaaactcagccaggtcccgcatgcaggttgatccaatattatgtgccagttct
ggaacgtttgttaatcttagtgctgtaatgcttcggctttgtgaaccctttctagatgca
gccacaacaaaaagggacaaaattgttgcaaactatttattttataacaatcgtctagat
ttcaaacaattgacagcaatgcatgcatcatctgaagaggttacagcatggatagataat
ggaaattgggagaggactgatgggcatgtcaataactttggggaagataaccatgtctta
gaatcccaggaagctacaagttctggtggtaatagtgggaattgtgccctttctaaagcc
aagccattgatgggttgttcaagaaagaataaattttcatttatatgtgaatgtttcttt
atgactgcaagagtacttaacttgggtcttatgaaagcactatcagacttcaaacatctt
gctcaggagctggcaaggtacgaagaagatttgtcaacctataaagcgttgagagatcaa
ggaacttctccacaacttgaggccgatataaagcgtctggagaaagcaattgagatatta
tcacaggacaaaatctgctatgaagctcagatactaagagacggggcactacttcaacac
gctctatcgttctacagattaatggttgtatggttggttggtctagttggtggatttaaa
atgccattgccatcaaaatgccctatggaattcgcatgcatcccagagcattttgttgat
gatgcaatggatttacttattttaacttctcggatcccaagagctttggaagggtttgtg
ctggatgattttttgaattttattatcatgttcatggcaagtccatcttatatcaaaaat
ccttatctgagagccaagatggttgaagtgttgaattgctggatgccgcaaagaagtggc
ttgtcttctactgcctcccttttcgaagggcaccaactatctcttgactatctagttaga
aatcttctaaacttgtatgtggacattgaatttactggctctcatacgcagttctttgac
aagttcacgattcgtcacaatattgctgaacttctcgaatatctatggaatgtgcctagc
catcgtaatgcatggagacagattgctagagaagaggagaagggagtttatttgaatttt
ttgaatttccttatcaatgatagcatttatcttcttgatgagagtttgaataagattctt
gaactcaaagaaatggaagcagaaatggctaattctgcagaatgggaaagaaggccagct
caagagagggaggagagaatgcgcctttttcattcacgggaaaatattgttcgatttgac
atgaagttggcaaatgaggatgttgggatgcttgcgttcacatctgaacaaattccttct
ccttttcttcttccagaaatggtagaaagggtggcaaacatgttgaactacttcctttta
caacttgctggccctcaacgaaaatctcttagtgtaaaagatccagaaaaatatgagttt
aaaccaaagcaattgctaaagcaaattgtcgagatctatgtccatattgcaaggggtgac
aaggaaaacatctttcctgctgcaatctcaaaggatgggcgctcttataatgaaaaacta
tttgcttccgtagctactattttgtggaaaattggtgaagatggaagggtaattcaggag
tttgttcagcttggtgtcaaagccaaagaagcggctgctgaagccatggatactgaggct
gcccttggagaaatacctgatgaattccttgacccaattcagtacacgttgatgaaggac
cccgtcatcttaccctcatcaagggtaaccatagatcgacctgtcatccaaagacacctg
cttagtgataatactgatccatttaaccgttctcatcttactcaagacatgctaataccc
gacactgagctcaagttaagaattgagaagttcgtcagatcccaagcgaggaagcacaga
cagcgaacttcaatcactgaaggagctgctgaacaagctgatggcgtaacttacatggaa
gagtga
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