Phoenix dactylifera (date palm): 103710836
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Entry
103710836 CDS
T03274
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103710836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103710836
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
103710836
mRNA cycle factors
Common to processing body (P body) and stress granule
103710836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
103710836
NCBI-ProteinID:
XP_008794961
UniProt:
A0A8B7CA92
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All DBs
Position
1:complement(29978616..29992290)
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AA seq
995 aa
AA seq
DB search
MRWMMTVPMNNSSAPSSRERVLSLYNKNIELENGLRKSAKSKVPSDPNAWLQMRENYEAI
ILEDHEFSEKHEIEYALWQLHYRRIEEFRAHINTAASSGGATTLQVGKSPAQPDRIKKIR
AIFKGFLSEATGFYHDLILKIRTKYGLPLDYFSDAPESQITVAKDEKKSFEMKKGLISCH
RCLIYLGDLARYKGLYGEGDSVGRDYAVASGYYGQAASLWPSSGNPHHQLAILASYSGDD
LLSLYQYFRSLAVNSPFLTARDNLIIAFEKNRQNCSQLPGSSRVSSARALPNRGTGKGRG
RGDFRPSAKETKVETTRIKERELSTPDIFKAFSTRFIRLNGILFTRTSLETFGEVFALVI
GDLLELLSSGPEEKLSFGQDAAGNGLVIVRLIAILIFSVHNAKRESEGQSYAEILQRTVL
LENAFTAAFDFVGHILKRCTQLHNAASSYLLPAILVFMEWLACHSDIAAGTDIEEKQAAA
RSFFWNQFVLLMNKLMLSGFADEDEDKTCFFDMVWYDDGESGNMLALWEDFELRGFSPLA
PAQLILDFSSNYLLENDGSNKEKSARVKRILAAGRALMNVVRIGQQEIYYDSKLKKFVIG
TKPPAYEDLDASELDDFKVEGPVGNSGTMQSTTANLQAKQSWGQLYVDGEEEDEVIVFKP
MAAEKYTNMSMPEAAAFGNIQPAQSSSLGDQSTYGGLQYSAAFSNTAAFSNIQMPAALNG
ISQPPVTVCSVSQPPAQHITPNTSKWSTEQESFIMGRLKILSIAENDICANPGLLNGRSS
LQPTAFSPSLSASSNLYTTSSSLLSAHINAGKAVIPAEVDSIMPLEADSDGVDMKVAASL
SAQRKNPVSRPARHFGPPPGFSKNPAKQMEDSNFKFTIKEEQPQMDDYSWLDGYKTSSIS
GMGMENSINRSTHIYPQVTASNSNSITGAISFPFPGKQISTVQPEMAYEKKWQDFQLFEH
LKLHAEKQLPQASQQSALLPEQHQAQSLWSSHFFV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgcgatggatgatgactgtaccaatgaataactcatctgctccctcgtcacgggagcgt
gtactgagcctttacaacaagaatattgaattggagaatggactgaggaagtcagcaaag
tcgaaagtcccttctgatcctaatgcatggcttcaaatgcgtgaaaactatgaggctata
attcttgaagatcatgaattctctgaaaaacatgagatagagtatgctttatggcagtta
cactacaggaggattgaggagttccgagcacacattaacaccgcagcatcctcaggtgga
gcgaccacattacaagttgggaaaagtcctgctcagcctgatcgaataaagaaaatacgt
gctatttttaaaggttttctttcagaggcaactggattctatcatgatttaatacttaaa
atcagaacaaaatatggcttgcctctggattatttttctgatgctcctgagagccaaatt
acagtggcaaaagatgaaaaaaaatcttttgagatgaagaaagggctgatctcttgtcac
cgctgtttgatatatttgggtgatcttgctcgttacaaaggactgtatggggaaggggac
tctgtcggtcgagattatgcagttgcttctggttactatggacaggctgcttccctttgg
ccttcaagtggcaatccacatcatcagcttgcaatacttgcatcgtattctggtgatgat
ttgctttcactctatcagtattttcggagcttggcagtgaatagtcctttcttaacagca
agggacaatttgattattgcatttgaaaagaaccgccaaaattgttctcagctgcctgga
agttccagagtttcttctgctagggcattgcccaatcgagggactgggaagggaagagga
cgaggagatttcaggccttcagctaaagagacaaaagtcgaaaccactcgcataaaagaa
cgagaacttagtacccctgacatttttaaagctttctccactcgatttattcgacttaat
ggcatcctcttcacacggacaagcttggaaacttttggagaagtatttgctttggtcatc
ggtgatcttcttgagctgctatcttctggacccgaggagaagctaagttttggtcaagat
gctgctggaaatggactggtcattgtgaggcttattgccattcttatattctcagttcat
aatgcgaagagggagtctgaagggcaatcatatgctgaaattttgcaacgtacagtgttg
cttgaaaatgcatttacagctgcctttgattttgtgggacatatcctgaaaagatgcaca
caattgcataatgctgcatcgagttatcttttaccagctattttggttttcatggagtgg
cttgcatgccattcagatattgcagctggcactgatattgaagaaaagcaagctgctgca
aggtcattcttttggaatcagtttgtattactgatgaacaaactaatgctaagtgggttt
gctgacgaagatgaggataaaacctgcttttttgatatggtctggtatgatgatggggaa
agtggtaatatgcttgcattgtgggaggactttgagttgagagggttttcacccttggcg
ccagcacagctcattttagacttctcaagcaattatttacttgaaaatgatgggagcaac
aaggagaaaagtgctcgtgtaaaaaggattcttgcagcaggccgggctcttatgaatgtt
gttcggataggtcaacaggaaatttattatgactcaaaactgaagaaatttgtaataggt
acaaagccacctgcatatgaagatttagatgcatctgagttagatgatttcaaagtagaa
ggtccagttggaaattcaggaacgatgcagtcaacgacagctaatctacaagccaaacaa
tcttgggggcagctatatgtggatggagaagaagaagatgaagtaattgttttcaagcct
atggctgcagaaaagtacaccaacatgagtatgccagaggcagctgcttttggaaacatc
cagcctgcacagagttcttccttaggtgatcagtcaacttatggtggtttgcaatattct
gctgctttcagtaatactgctgctttcagtaatattcagatgccagctgctctaaatggc
atttcgcaaccacccgtaactgtgtgcagtgtttctcagcctcctgctcagcatattact
ccaaacacttcaaagtggtctacggagcaagagtcatttatcatgggcaggcttaagatt
ttgagcattgctgaaaatgacatatgtgctaatccaggtttgctaaatggacgtagtagt
ttgcagcctactgcattttccccatcactttctgcatcttccaatctgtataccacctct
agcagtctgttatctgctcatataaatgctggcaaagctgttataccagcagaagttgat
tccataatgcctttggaagcagattctgatggtgtggatatgaaagttgcagcatctttg
tcagctcagaggaaaaaccctgtaagccggcctgctaggcactttggaccaccacctgga
tttagcaagaaccctgctaagcaaatggaggactccaattttaaatttactatcaaggaa
gaacagcctcagatggatgactatagctggctagatggatataagacatcatcaatcagt
ggtatggggatggaaaattccatcaatcgttctacacatatatatccacaagttactgct
agtaatagcaacagtattactggtgctattagctttccttttcccgggaaacagatttct
actgttcagcccgagatggcatatgagaagaagtggcaagatttccagctctttgagcat
ttgaagttgcatgcagaaaagcagcttccccaagcaagtcagcagtctgctcttttacca
gagcagcatcaggcacaatcattatggtctagccatttctttgtgtga
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