Phoenix dactylifera (date palm): 103711492
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Entry
103711492 CDS
T03274
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103711492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103711492
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103711492
Complex C
U5 SnRNP specific factors
103711492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
103711492
NCBI-ProteinID:
XP_008795869
UniProt:
A0A8B7CBQ6
LinkDB
All DBs
Position
1:21859022..21873110
Genome browser
AA seq
2363 aa
AA seq
DB search
MWNSGASSSSSQMPPPPPPPVAPPGTTGGTGVPPPPAVQPSYSIPPSPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRNVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEAIQLELDEEEDSAVYTWFYDHKPLVK
TKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLGIYHTPM
IMFIKAEDPDLPAFYYDPLINPITSINKVDRREKKVYEEDDEDDFSLPDGVEPLLQNTQL
YTDTTAAGISLLFAPRPFNTRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKC
FVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTML
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLL
GLTRASEIAGPPQMPNEFITYADTKIETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMRNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLH
SAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKM
LLKPDKTIITEPHHIWPTLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGLS
PQDNPQVKEIRCIVMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQD
VTSHARILENSKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMRYGTKLGTPRDYYHEDHRPT
HFLEFSNLEEGDTTEADREDTFT
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatagcggagcgtcgtcctcgtcgtctcagatgccgccgccgccgccgccgccg
gtggcgccgcccgggacgacgggagggacaggcgtccccccgccgccggcagtacagccc
tcctatagcataccgccgtcccctgcggagctggaggcacagctagtggagaaggccagg
aagtggcaccagctcaactccaagaggtatggggacaagaggaagttcggctttgtcgag
gcccagaaggaggacatgccccccgagcacgtcaggaagatcatcagagaccatggagac
atgtcctccaagaaataccgtcatgacaaacgtgtctaccttggggctctgaaatttgtt
cctcatgcagtgtacaagcttcttgaaaacatgcctatgccctgggagcaggttcgcaat
gtgaaaattttgtatcacataactggtgcaatcacattcgtgaatgagatcccatgggtg
gttgaacccatatatttagcacagtggggtacaatgtggattatgatgcgaagagagaag
agagatcgacgacacttcaaaagaatgcgttttcctccttttgatgatgaggaacctcca
ttggattatgccgacaatttattagatgtggatccattggaggctattcaactggaatta
gatgaagaagaagattctgctgtatatacatggttctacgatcataaacctcttgtaaag
acaaagctcataaatggtccaagttatagaaagtggcatctttcacttccaatcatggca
actcttcatcggcttgcaggacagctgctctctgatttgattgatcgaaactatttttac
ttgtttgatatggagtcgtttttcactgccaaagcgctgaatatgtgcataccaggaggc
cccaagtttgagccactgtaccgtgatatggaaaaaggagatgaggattggaatgaattt
aatgacattaataaactcattattcgccagccgctcagaacagaatacagaatagcattt
cctcatctatacaacaataggccaaggaaagtgaagcttggcatatatcatactcctatg
ataatgtttattaaagctgaggatcctgatttacctgcattctactatgatcctctgatt
aaccccattacttccatcaacaaggttgaccgacgggagaagaaagtttatgaagaggat
gatgaggatgatttttctcttccagatggagttgaacctctactgcaaaacactcaacta
tatactgatactacggctgctggtatctcattgttgtttgcaccacgtccattcaacacg
agatctggtcgtactaggcgagctgaagatatacctcttgtatcagaatggtacaaggag
cactgccctccatcatacccagttaaagttcgtgttagttatcaaaagttattgaagtgt
tttgtattgaatgagttgcatcatcgacctccaaaggcacaaaaaaagaaacacttgttc
cgatcactccaagcaactaaattctttcaaacaacagaattggattgggcagaagcgggt
ttacaagtttgtaagcaaggatacaatatgttaaatctgttgattcacagaaagaatctt
aattatcttcaccttgattataatttcaatttgaaacctgtaaagacacttaccacaaag
gagcggaagaagtcacgatttggaaatgcgtttcatctatgtcgtgaaattttgcgactg
acaaagcttgttgttgatgccaacattcagttccgcctgggaaatgtcgacgcctttcaa
ttggctgatggcttgcagtatatattcgctcatgttggacagctgactggtatgtaccgt
tacaagtacagactgatgcggcagatcagaatgtgtaaagacttgaagcacctgatttac
taccgattcaatactggtcctgttgggaaaggtcccggctgtggattttgggcccctatg
tggagggtgtggttgtttttccttcgtggcattgtgcccttgctagaaagatggttgggt
aatttgcttgcacgccaatttgagggtcgccattctaaaggagttgccaagactgttaca
aagcaacgtgttgagagtcacttcgacttggaactccgagctgctgttatgcacgatgtt
cttgatgcaatgccagagggcattaagcagaacaaggctaggactatcttgcaacaccta
agtgaggcatggcgttgttggaaagccaacataccatggaaggttccaggacttccagta
cctattgaaaacatgattcttcgttatgtgaagtccaaggcagattggtggaccaatgtt
gctcactacaatcgggagcgtattagaaggggtgcaacggtcgataagactgtttgtaga
aagaacctaggaaggttgactcgcttgtggctaaaagctgagcaggaaaggcaacacaat
tacttgaaagatggtccatatgtcacccctgaagaagcggttgctatctacactacaaca
gttcattggctggagtcaaggaagttttctcctataccatttccacctttatcatacaaa
catgacactaaacttcttatcctggcactagaaaggctgaaagagtcttatagcgtggca
gtgagattaaatcaattgcaaagggaagaactgggtctgattgaacaagcctatgacaat
ccacatgaggcattgtcaaggataaagcggcacctgcttacacagcgtgcatttaaagag
gttggcattgagttcatggatttgtatagttacctgattcctgtgtatgaaattgaacct
ctggaaaaaattacggatgcatatcttgatcagtatttatggtacgaaggtgacaagcgg
caccttttccctaattgggtcaagcccgctgattctgagccacctcctcttcttgtctat
aaatggtgtcaaggtataaacaacttacagggcatatgggacacaagtgatggacagtgt
gttgtgatgctgcaaacaaagttcgagaagttcttcgagaaaattgacttgaccatgtta
aacaggcttcttcgtttggttcttgaccacaatattgccgattatgtcacagctaaaaac
aacgtagtgttgtcatacaaggatatgagtcacacaaactcatatggtctcattcggggt
cttcaatttgcttcatttgttgtgcaatattatgggcttgtgttagatctcttgcttctt
ggtttaactagagccagtgaaatagctggtcctcctcagatgcccaatgagttcattact
tacgcagacaccaaaattgagactaggcatcctattcggttatattcacgatacattgac
agagtacatattttgttccgcttcactcatgaagaggcacgagatctgattcagcgatat
cttacagagcatcctgatccaaacaatgaaaatatggttggatataataataagaaatgt
tggccaagggatgcaagaatgagattgatgaaacatgatgtcaaccttgggcgaagtgtt
ttttgggatatgaggaatcgattacctcgaagtatcacaacgttggagtgggaaaacagc
tttgtctctgtttacagcaaggataaccccaatctgctattcagcatgtgtggatttgag
gttcgcatattgccaaagataagaatgactcaagaggcatttagcaacacaaaagatgga
gtttggaacttgcagaatgagcagaccaaagagagaacagcaatagctttcttacgtgtt
gatgatgaacatatgaaggtgtttgagaatcgtgtgaggcagattcttatgtcatccgga
tcaacaacatttactaagatagtcaacaaatggaatactgctcttattggtcttatgaca
tattttcgtgaagcaactgtgcacacacaggagctattagatctgctggtcaagtgtgaa
aataagatccaaactcgtatcaagattggactgaattcaaagatgcctagcaggtttcct
cctgtcattttttacacaccgaaagaaataggaggccttggtatgttgtcaatgggtcac
attttgatcccacaaagtgatctaaggtacagccaacaaacggatgttggggttacacat
ttccgtagtggtatgagtcatgaggaggatcagcttattccaaacctttaccgctacata
cagccttgggagagcgaattcatcgattcacagcgtgtttgggctgaatatgctttaaag
aggcaggaagcgcaatcacaaaatagacgattaacccttgaggatcttgaggattcctgg
gatagggggatacctcggatcaacacccttttccaaaaagatcgtcatactctggcatat
gacaaagggtggagagtacgaactgattttaagcaatatcaagtcttgaagcaaaatcca
ttttggtggacccaccagcgacatgatggcaaactttggaacttgaataattatcggact
gatgtcatccaagcacttgggggagtcgagggtattctggaacacaccttatttaaaggg
acatattttccaacttgggaaggtctcttttgggagaaggcatcaggatttgaggagtct
atgaaatataagaagcttacaaatgcacaacggtctgggctgaatcaaatcccaaaccga
aggttcactttgtggtggtctcctaccataaatcgtgcaaatgtgtatgtaggcttccag
gtgcaacttgatctcacgggaatattcatgcatggaaagatacccacattgaagatatct
ttaattcagatatttcgtgctcatctttggcaaaaggttcatgagagtgttgttatggat
ctctgccaagttctggatcaggagttggatgcattagaaattgaaactgtacaaaaagag
accatacacccaaggaagagttacaagatgaacagttcttgtgctgatattcttcttttt
gctgcacatagatggccaatgtccaaaccaagcctagttgctgagtccaaagatgtgttt
gatcagaaagcaagcaataaatactggatagatgtgcaacttcgttggggagactatgat
tcacatgatatagaacgttacacaagggccaaatttatggattacacaactgacaacatg
tccatatatccatctcccactggtgtgatgattggacttgatttagcatataatctgcac
tccgcctttggcaattggttccctggttcaaagcctttgttggctcaagcaatgaacaaa
atcatgaagtcaaatccagcattatatgttttgagggagcgaataaggaagggtctacaa
ctgtattcatccgaacctactgaaccatatctttcatctcaaaactatggggagatcttc
agcaaccaaatcatatggtttgttgatgacacaaatgtatatcgagttacaatccataaa
actttcgagggaaatctcactacaaaacccatcaatggtgccatttttattttcaaccca
aggacagggcagctgtttctgaaggtgatccacaccagtgtgtgggcagggcaaaagcgt
cttggtcagttggcaaaatggaaaacggcagaggaagtggctgctcttgtgcggtcactg
ccagtcgaagagcagccaaagcaaattattgtgacccgcaaagggatgctggatcctttg
gaggtccatttgcttgatttccccaacatagtgatcaagggcagcgagctgcagttgccc
ttccaggcttgcttgaaaattgagaagtttggtgatttgattctgaaggccactgaacct
cagatggttcttttcaatatttatgatgattggttgaaaagtatttcatcatacaccgct
ttttctcgtcttatattgatcctacgggcactccatgtgaacaatgagaaggcaaagatg
ttactgaagcctgacaaaacaattatcactgaaccgcaccacatctggcccacacttaca
gatgatcagtggatgaaggtggaagttgcactgagagatctcatactttctgactacgcc
aagaagaacaatgtgaacacttctgcactaacacagtctgaaattcgtgatataattctt
ggtgctgagataactccaccctcacagcagagacaacagattgctgaaattgaaaaacag
gccaaagaagcgagtcaattgactgcagttacaacgaggacaacaaatgtgcatggagat
gaacttatagtcaccacaaccagtccctatgaacaagcagcatttggttctaaaactgac
tggcgtgttagggctatatcagcaacaaatctttatcttcgcgttaatcatatttatgta
aactcagatgacattaaggagactggatacacttacatcatgcctaaaaacatattaaag
aagttcatctgcatagcagatttacgaacacagattgcaggatatctatacgggttaagc
ccccaagataatccacaagtgaaagagatccgttgcatagtcatgccaccacaatggggg
actcatcagcaggttcatctcccatcagctcttcctgagcacgacttcttgaatgatcta
gagccgttgggatggatgcatactcagcccaacgagcttccccaactctctcctcaggat
gttacatctcatgctcgaattctagagaatagtaaacaatgggatggcgagaagtgcatc
attttgacgtgtagcttcactccaggatcttgctcgttgacagcgtataaactcacgcca
tcgggttatgaatggggccgtgtcaacaaggacactggaagcaatccacatggctacctg
ccaacacattatgaaaaggtgcagatgcttctcagcgaccgcttcttgggattctacatg
gttccagataatggcccttggaattacaacttcatgggggtaaagcacacagtgagtatg
cgatatggcacaaagcttggaacacctcgagactactaccatgaagaccataggccgaca
cattttctcgagttcagtaatttggaagagggggacactacagaggctgacagagaggat
acctttacgtag
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integrated database retrieval system
