Phoenix dactylifera (date palm): 103712080
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Entry
103712080 CDS
T03274
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103712080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103712080
03041 Spliceosome [BR:
pda03041
]
103712080
03036 Chromosome and associated proteins [BR:
pda03036
]
103712080
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103712080
Spliceosome [BR:
pda03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103712080
Complex B
103712080
Complex C
U2 SnRNP specific factors
103712080
Chromosome and associated proteins [BR:
pda03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
103712080
TFTC complex
103712080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
DUF4653
Motif
Other DBs
NCBI-GeneID:
103712080
NCBI-ProteinID:
XP_038973265
UniProt:
A0A8B8ZGI8
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MARMEEEELPAGSQSWPQAPVGGGGVGVHYLAKCVLRGSAVLQAVQGHLRSPSSFDVVFG
KETSLELVVVGEDGIVQSICEQSVFGTIKDLAVLRWNEKFRDAMPQEQGKDLLVVLSDSG
KLSFLTFCSEMHRFFAMTHIELSKPGNSRHQLGRMLVVHPEGSFVAVSAYEDRFALFSVS
KSAESNVVGEKIFYPPENEGEMSTTRDTSMTSIRGTIWSMSFISNGTSHLSMEGYDPVLA
IIMHRKVSAMNDLMLFGCNSRTHTIHFLSRFPEPGPLALSISAVPHLSGFAFLFRTGDVL
LMDLRDPENILCIHRINLNLPSVIEERNSIEESCRGLDVDDEGMFNVAACALLELRDSAD
CMVKDDDPMSIDSGSGKGNLYRKHVCSWSWEPGESMSSKLIFCLDTGELYIIEINVDTEG
VRVNLSDCLYKGLPCKALLWVNGGLIAGLVEMGDGMVLKLEHGRLLYRSPIQNIAPILDL
SVADYHDEKQDQMFACCGMSPEGSLRIIRSGISVEKLLRTAPIYQGVTGTWTLRMKESDS
YHSFLVLSFVEETRVLSVGLSFIDVSDAIGFQSDVCTLACGMVADGLLVQIHRTGVRLCL
PTTFAHSEGIPLSAPICTYWYPDNVTISMGAVGCNLIILATSNPCFLYILGVRSLSAYHY
EIFEIQHVRLQHEVSCISIPRGHVNHELLASQVRLSHKDHEASLSSKVEIRKLFVIGTHK
PSVEILSFSPEGAFRVLAIGSISINNILGSPISGCIPEDVRLVSIDRPYVLSGLRNGMLL
RFEWPAISTFSQLESNRQGQFGSSCFREVESSLLKTMSTYSLGKMMENAENPVPVPLQLI
AIRRIGITPVFLVSLHDSLDADIIILSDRPWLLHSARHSLAYTSISFQPATHVTPVCSVD
CPKGILFVAENSLHLVEMVHSKRLNVQKFPIGGTPRKVLYHSESKTLLVMRTGLTDATCS
SDICRVDPLSGTLLSKFKCEPGETAKCMQIVRVGNEQVLVVGTSQSAGRTIMPSGEAESA
KGRLIVLSLDSAQSSSEGSSLIYCSTLNSSSRVGSPFHEIVGYATEQLSSSSLCSSPNDT
CCEGIQLEEMGAVQLRLIFQNTLSGAVLSVCPYLDRYVVASAGNILFVYGFVNDNPQRLR
RFSLARTRFTITCLKTHFTRIAVGDCRDGILFYSYHEDLKKLELLYSDPVQRLVADCALM
DCDTAVVSDRRGNISVLSCTNNLEVNGSPEKNLALNCSFYMGETVMSIQKASFSYKLPVD
DVLNGCDGAEVVLESAYNSVVASSLLGSVWILIPITSEEHELLEAVQARLAVHPLTAPIL
GNDHKEFRGRGLPVGVPTMLDGDMLAQFLELTSMQQEAVLASSGLQSTRASTSETQHLFI
SVNRVVRLLERVHCALN
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggatggaggaagaggagttgccagccggaagccagtcgtggccgcaggccccg
gtcggcggcggcggcgtcggcgtccactacctggccaagtgcgtcctcaggggaagcgcc
gtcctccaggccgttcaaggccacctccgctccccctcctccttcgacgtcgtcttcgga
aaggagacatcacttgaattggtagtagtcggcgaagatggaattgtgcaatcaatctgt
gagcaaagtgtatttggcacgataaaagatcttgctgtactgcggtggaatgagaaattt
cgtgacgctatgcctcaggaacaagggaaagaccttttagttgttctttcagattctgga
aagctttcttttcttaccttttgttcggagatgcacaggttctttgcgatgacgcacatt
gaattatccaaaccaggaaactcgagacatcaattgggaagaatgttagtggttcatcct
gaaggttcttttgttgctgttagtgcatatgaagaccgatttgccctgttttctgtgtct
aaatctgctgaaagcaatgttgttggtgagaaaatcttctatccaccagaaaatgaagga
gagatgagcactacaagggatacatcaatgactagcatccgtggtacaatttggagcatg
agcttcatttcaaatggcaccagtcatctaagcatggaaggatatgatcctgtattggca
ataataatgcacaggaaagtctctgccatgaatgacttgatgttgtttggatgtaactct
cggacacatactattcattttctttctcgatttccagaacctggacctcttgcacttagt
atatctgcggtgcctcatctttctggctttgcatttctgtttaggaccggtgatgtgctt
ttaatggatcttagagacccagaaaatatcttatgtattcacaggattaacttaaattta
cctagtgttattgaagagcgaaattctatcgaggaatcatgtagaggacttgatgttgat
gatgaaggtatgtttaatgtagctgcttgtgctttgctagaattgagagattctgctgat
tgtatggtcaaggatgatgaccctatgagcattgatagtggaagtggtaaaggaaattta
tatcgcaagcatgtgtgttcatggagttgggaacctggtgagtcaatgagttcaaagttg
atcttttgtttggacacaggggaactgtatataattgaaattaatgtcgacaccgaggga
gtcagagttaatttatctgactgtctctacaagggtttgccttgcaaggcgctgctatgg
gtcaatggtggattaattgcagggcttgtagagatgggagatgggatggtcctcaagttg
gagcatggtaggttgctttacagaagtcccattcaaaacatagcaccaattctggattta
tctgttgctgattaccatgatgaaaaacaggatcaaatgtttgcctgttgtggaatgagt
cctgagggatcattaagaattattcgaagtggtattagtgtagaaaagcttttaaggact
gccccgatttatcaaggagtaactggtacatggacactgaggatgaaagaaagtgattct
taccattcttttcttgtgttgtcttttgttgaagaaactagagtactgtcagttggttta
agctttattgatgtcagtgatgctattggttttcagtctgatgtttgcactttggcctgc
ggtatggtggctgatgggttgcttgtgcaaattcacaggactggtgtaagactttgtttg
cccactacatttgctcattctgaaggtatccctctttctgcaccaatttgcacctattgg
tatcctgataatgtgaccatcagcatgggtgcagttggatgcaatctgataattttagct
acttctaatccttgttttctatatatccttggggtcagatcactttcagcttatcattat
gaaatatttgagattcagcatgtgagactgcagcatgaagtatcttgcatatctatacca
agaggacatgtcaaccatgagcttttagcttcacaagttagattgtctcacaaggatcat
gaggccagtctctcaagtaaagttgaaatcaggaagctttttgtcattggtacacataaa
ccgtcagtggaaattctttcattttcccctgaaggagccttcagagtccttgctattgga
agcatctcaataaataatatactgggaagccctattagtggttgcatccctgaagatgtt
agacttgtatcaattgatcggccctatgttctttcaggtctgagaaatggaatgctactt
cggtttgagtggcctgcaatctctacattttcccagttagaatcaaacagacagggccaa
tttggtagttcttgctttagggaagttgaaagttccttactgaaaaccatgtctacatat
tcacttggtaagatgatggagaatgctgaaaaccctgtgccagttcctttacaattgatt
gccatccgtcgcattgggattactcctgtatttttggtatctctgcatgattcacttgat
gcagacattattattctcagtgataggccttggttattgcattccgcacgacacagcctt
gcatatacatctatttcgtttcagcctgcaactcatgtgaccccggtgtgttctgtcgac
tgccccaagggaattttatttgttgcagagaacagcttacatttggttgaaatggttcat
agcaagagactaaatgtgcagaagttccccattggaggcacaccacggaaagttttatat
catagtgaaagtaaaacattgttggtgatgaggactggactaactgatgctacatgctcg
tcagacatatgccgtgtagatcctctcagtgggacactgctttcaaaatttaagtgtgaa
cctggggaaacagcaaaatgcatgcaaatagtgagggtaggaaatgagcaagtgttggtt
gttgggaccagtcagtctgctggcaggactattatgcctagtggtgaagctgaaagtgcc
aagggacgcttgattgtgctgagcttggatagtgcacaaagttcttcagaaggcagctcg
ttgatctactgttcaactttgaattcttcatcccgagttggttcaccattccatgagatt
gttggttatgcaactgaacagttatcaagcagcagtctttgcagcagtccgaatgatact
tgctgtgaaggaattcaacttgaagaaatgggagcagtgcagttgcggttaatttttcaa
aatacattatctggtgctgtactctctgtttgtccatatcttgaccgatatgtcgtggca
tctgcgggtaatattctctttgtttatggttttgtgaatgacaatcctcagcggttgaga
aggttttctttggcaaggacacgctttactataacttgtttgaagactcattttactaga
atagcagttggtgactgtcgtgatggtatccttttctattcttatcatgaggatcttaag
aaactggagctattatattctgatcctgttcagaggttggttgctgattgtgctcttatg
gattgtgacactgctgtagtatcagatcgtagagggaatatatctgttctgtcatgcaca
aataacttagaagtgaatggaagcccagaaaaaaacctagcgctaaattgttcattttac
atgggagagactgttatgagcatccagaaggcttcattttcgtacaaacttccagtggat
gatgtattgaatggttgtgacggtgcggaggtagtcttagaatcagcctacaacagtgtt
gtggcaagttcattgcttggaagtgtatggatcctcattcctattacgagtgaggagcac
gaattgttagaagctgttcaagctagacttgcagttcatccattgactgctccaatccta
ggaaatgaccacaaggaattccgtgggcgtgggttaccggtgggagtgccaaccatgctt
gatggagacatgcttgcccagttcttggagctaactagcatgcagcaagaagctgtgctt
gcatcatctggcttgcagagtacgagagcttcaacttcagagacgcagcatttgtttatc
tctgtcaatcgggttgttcggctgctggagcgagttcattgtgcccttaactaa
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integrated database retrieval system
