Phoenix dactylifera (date palm): 103712937
Help
Entry
103712937 CDS
T03274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103712937
09122 Translation
03013 Nucleocytoplasmic transport
103712937
03015 mRNA surveillance pathway
103712937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103712937
03041 Spliceosome [BR:
pda03041
]
103712937
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103712937
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103712937
Spliceosome [BR:
pda03041
]
Complex C
Other components
EJC/TREX
103712937
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103712937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
103712937
NCBI-ProteinID:
XP_008797870
UniProt:
A0A8B7CEZ9
LinkDB
All DBs
Position
4:complement(2482390..2491572)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEARENDAYEEELLDYEEDEEKAPDAVAAKASNETAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVSGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHVAKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaagggaaaacgatgcttacgaggaggagcttcttgactacgaagaggac
gaggagaaggcccccgacgccgttgcggccaaggctagtaatgagactgcgaagaaagga
tatgttggaattcatagttccggattcagagacttcctattgaagccagagcttcttcgg
gctatcgtagattcaggctttgagcatccttctgaagtacaacatgagtgtatccctcaa
gctattttgggaatggatgtcatctgtcaagcaaaatctgggatggggaagactgctgta
tttgttctctcaacacttcagcaaatcgagcctgtttcaggccaggttgctgcacttgtt
ttgtgccatacgagggagttagcttaccagatttgccacgagtttgagaggttcagcacg
tacttgcctgatattaaagttgctgtgttctatggaggagttcacgttgcaaaacacaag
gatatactgaagaatgagtgtcctcacattgtagttgggacaccaggaagaatactggca
ctcgctagggataaagatctttccttgaagaatgtgaggcattttattcttgatgaatgc
gacaagatgcttgagtcacttgacatgcggagagatgtgcaggagattttcaaaatgaca
cctcatgataagcaagtcatgatgttttcagcgactctcagcaaggagatccgtcctgtt
tgcaagagatttatgcaagatccaatggaaatatatgtggacgatgaggccaaacttacc
ctgcatggtttagtacagcactacatcaaactgagcgagttggaaaagaaccggaagttg
aatgatcttttggatgcgctggacttcaatcaggttgtgatctttgtcaagagtgtcaac
agagcagcagagctgaacaagttgctggtagagtgcaattttccatcaatctgcatccac
tctggaatgtcgcaggaagagagattgatgaggtacaagggcttcaaagaagggcacaag
agaattctcgttgctactgatttggttggcagagggattgatattgagcgtgtcaacatt
gtaataaattatgacatgccagattctgctgacacatacttgcacagggttggcagagct
ggtcgatttggaacaaagggacttgctattacatttgtctcatctgcctctgactcagat
gttcttaatcaggttcaagagaggtttgaggtggacataaaggagctgccagagcaaatt
gacacctccacatacatgccatcttga
DBGET
integrated database retrieval system
