Phoenix dactylifera (date palm): 103713319
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Entry
103713319 CDS
T03274
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103713319
09122 Translation
03013 Nucleocytoplasmic transport
103713319
03015 mRNA surveillance pathway
103713319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103713319
03041 Spliceosome [BR:
pda03041
]
103713319
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103713319
Spliceosome [BR:
pda03041
]
Complex C
Other components
EJC/TREX
103713319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP
RSB_motif
SAP_new25
Motif
Other DBs
NCBI-GeneID:
103713319
NCBI-ProteinID:
XP_008798424
UniProt:
A0A8B7CFY8
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Position
8:complement(9258654..9268731)
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AA seq
653 aa
AA seq
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MSSPYSVLNNKPIDQWRVTELKEELRKRKLPIKGLKEDLVKRLDEAVRNEKESTKEEVDN
GFDLAPDPQDNGDQVEEDPQAEVHIEAVTDKVEKTDNDATIVDGSPLDINQVVNIQDGDP
MPLLRSDAAAVEPSVNAASMEDSAAASVGDSITESQHVTLHNDSSSQDLRYDERHEESKP
SIEDVMRSPSEPKNQVSEVSPDLGFQVRCESISTDSVSIIEKNKLKDNLNDDNFHLEVVK
PEMMQISSSNDPPICGDLHPLDDDKELVKNQVSLEEADAKNATNLDLSKNEDSADGGSPE
KLNLDRSSGDESMEEDVLESKHIESNIKSDEPGEKTEASEMHTVEKGTSVVAAVGVSSLE
KKDTVDEEKVGPTAPTEKRKLEDNEAVRINEAIKRQRRWNSESIKFPEQQSSNISTSSIL
KDALLPATKRTFTRSDSTLSGDSPKERVVPPSHKLPTTSLRIDHFLRPFTLKAVQELLAK
TGTVCSFWMDQIKTHCYVTYSSVEEAVATRNAVYNLQWPPNGGKLLAAEFVDPQEVKQHV
EAPPQSSAPISSSPVTPKASPFEQPQASQPSRQHTLRQQLPPPPTLPPPPPTSDPPVGER
LPAPPPLKKPEQAVVTLDDFFKKTKASPRIYFLPLSEEQVMAKLAAQGKSIRG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctccatattctgtactgaacaacaaacccattgatcaatggagggttactgaa
ttaaaggaagagcttcgtaaaaggaagttgcctattaagggtctcaaggaggacctggtg
aagcggttagatgaagcagttcggaatgagaaagaatcaactaaagaagaagtggataat
ggctttgatcttgctccagatcctcaggacaatggtgatcaagtggaagaagatccacaa
gcagaagttcatattgaagccgtcacggataaagttgagaaaactgacaatgatgccact
atagttgatggcagccctctagatatcaatcaagttgtcaacattcaagatggggatcca
atgcctcttttgagatcagatgcagcagctgtggaaccatcagttaatgcagcttccatg
gaagacagtgctgcagcttctgtgggagacagcatcacagaaagccaacatgtgaccctt
cataatgattcaagcagccaagatttgcgatatgatgaaaggcacgaggaatcaaagccc
tccattgaggatgtcatgcgcagcccgtcggaaccaaaaaatcaggtatctgaggtcagc
ccagatttagggttccaagtaaggtgtgagtcaatttctactgattctgtgtcaattatt
gaaaaaaataaattaaaggataatttgaatgatgataattttcacttagaagttgttaag
ccagagatgatgcaaatatcatccagcaatgatcctcccatttgtggcgatttgcaccca
ctggatgatgacaaagaactagttaagaaccaggtctctttggaagaagcagatgccaaa
aatgctacaaatctggaccttagcaagaatgaagatagtgcggatgggggttctccagaa
aaattaaatttagacaggagttcaggtgatgagtcgatggaggaggatgtcttggaaagt
aagcatatcgagtccaatattaagtctgatgaaccgggggaaaaaactgaggccagtgaa
atgcatactgtagaaaaggggacctctgttgttgctgcggtgggtgtgtcctctcttgaa
aagaaggatactgtggatgaagagaaggtgggacctactgctcctactgagaagagaaaa
cttgaagacaatgaagccgttaggatcaatgaggcaataaagcggcaacggcggtggaat
tcagagagcattaaatttccggaacagcaatcatccaacatcagtacttcaagtatactt
aaggatgctttgctacctgctactaaacgtacattcactaggtctgactcaacacttagt
ggagattctccaaaggagcgagttgtgccaccatcacacaagctgccaacaacttccctg
agaatagatcattttttgcgtcccttcactctgaaagctgtgcaagagctgcttgcgaaa
actggaactgtctgcagtttctggatggaccaaatcaagacccactgctatgtgacttat
tcatctgttgaggaggctgtagcaactcgaaatgctgtctacaatctccagtggccacct
aatggtgggaaacttctagcggctgagtttgttgaccctcaggaagtaaagcagcatgtt
gaggccccaccacaatcatctgcacccatcagttccagccctgtgacaccaaaggcatct
cccttcgagcaaccccaggcatcccaaccatcccgtcaacatacccttaggcagcagcta
cctcctccaccaacccttccccctccaccacctacatccgatccacctgttggagaacgt
cttccggcaccacctcctctgaagaaaccggaacaagctgttgtgaccctcgatgatttc
ttcaagaaaacaaaagcctctccgaggatctactttctacccttgtctgaagagcaggtg
atggctaaacttgcagcacaggggaaaagcatcagaggctag
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