Phoenix dactylifera (date palm): 103713882
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Entry
103713882 CDS
T03274
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X2
KO
K12600
superkiller protein 3
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103713882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103713882
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103713882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_17
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_19
TPR_12
TPR_7
TPR_9
ARM_TT21_C
BTAD
Motif
Other DBs
NCBI-GeneID:
103713882
NCBI-ProteinID:
XP_008799156
UniProt:
A0A8B7CH79
LinkDB
All DBs
Position
11:complement(6262207..6289991)
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AA seq
1180 aa
AA seq
DB search
MEESIFRQLQQTLNDDPNNPTHHYNLGLFLWKKWERIDGEESKKYKEKAAEHFLACAKLN
PSEGAAFRFLGHYYSQVSADAQRASKCYQRAVTLNPDDFEAGEGLCDSLDEEGKESLEIA
LCKEASGKSPRAFWAYRRLGYLQVHQKKWSEAVQNLQHAIRGYPACADLWEALGLAYQCL
GMFTAAIKSYGRVIELDDSRVFALIESGNIQLMLGSFRKGVEQFRHALEITPHNVSAHFG
LASGLLAWSNDCINSGAFGWGASLLLEASEVAEASIRLSGNISSSWKLHGDIQITYAKCF
PWEDRRNSSEFDAEAFKASIVDWKKTCLLAANAAKQSYQRALHLSPWQANIYADIAISVD
LISSLEEKDTSDMDAWQLAERMSLGALILEGSNKDFWVILGCLSTNHALKQHALIRGLQL
DMSLSAAWAYLGKLYRKLGEKQLARKAFDHARSIDPSLALPWAGISVDSHGSSQSEAYEN
CLRAVQILPLPKFQVGLGALAIPSGQLLSPKVFGAIRQAIQRAPYSPEAHNLNGLLCEAR
SDYQSAITAYQQARCALHMEHNSVADLRSHIADVSVNLARALIKAGHANNAAEMCDYLKK
EGLFDSKGLQIYAVALWKIGQYDQALSMARNLAQSVSTMKQTCAAAALGLICSLIYRISG
RDSAVATIQKFPPELLQSTRMMFTLSALNALDPSNQLQLLLPSPQNVKSRDVVTEIYSII
AISKMIGHGLKQNLDIDGGVDYLRKALHLYPNSSLIRSQLSSLLLSSGDWMASHKAARCT
ATPNGHIVKKELELSYKIHGAAVVACYASCSNNPKFSFPTCKDQPAHGTNVIHSMQRWLH
QEPWNLDAHYLLVLNVLQKAREEKFPQHLCSTLKRLLLVALSKEIYMKENKLHQYQKFVL
LLCASEVSLQCGDYHGGVKHATDALGILPPNSDPFFARLQLCRAYAAGEDFLNLKNEYMN
CLQIKTFNQIGWISLKYIESRYQLQNNSNAIDMYFHMCSTGKGASSNIWEAVFYLACAQS
FIWDQDYLRAEQALAHACAIGDAESCLLLFHGAVSMELARQQPGPQFLSRAVSSLTKAQE
TSPVPLPIVSLLLAQAEASLGAKAKWERNLRVEWFSWPAEMRPAELYFQMYLLARQLNAS
SSQHSGIESMQIPKNWVLQAVHLNPSCLRYWKVLQKLSEG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaagagagtatctttcggcaactgcagcaaaccctaaacgacgatccgaacaacccc
acccaccactacaatctcggtctcttcttgtggaaaaagtgggaaagaatagatggagag
gaatcgaagaaatacaaggagaaggcagctgagcatttcttggcctgtgcgaagctgaac
cccagtgaaggtgccgcgtttcggttcctagggcactactacagccaggtctcggcagac
gcacagagggcttccaagtgctaccagagggctgtgaccctgaatcccgatgattttgaa
gccggtgaagggctgtgtgattcgttggatgaagaaggaaaggaaagtttggagattgct
ttgtgtaaagaggcatctgggaagtccccgagagctttttgggcgtacaggagattagga
tacctgcaggtccatcaaaagaaatggtcagaggcagtacaaaaccttcagcatgcaata
cggggatatccagcatgcgccgatttgtgggaagcacttggtcttgcataccaatgcttg
ggcatgtttactgcagcgataaagtcttacggacgagtcattgaattggatgactcaaga
gtatttgcactgatagaaagtgggaacattcagcttatgcttggttcatttagaaaagga
gttgagcaatttcggcatgctttagaaataacacctcataatgtatccgcacactttgga
cttgcttctgggctgcttgcgtggtcgaatgattgcataaattctggagcatttggttgg
ggtgcttctctgttattggaagcatcagaagttgcagaagcgagtatccgtttatcagga
aatatatcttcttcttggaaattgcatggggatatccagatcacgtatgcaaaatgcttt
ccatgggaagatagaaggaatagtagtgaatttgatgcggaagcctttaaagcctccatc
gttgattggaagaagacatgccttttggctgcaaatgctgctaagcaatcataccaacgg
gctctacacttaagcccgtggcaggccaatatctatgctgatattgcaatctctgtggat
ctcatttcctccctggaagagaaagacacatcagacatggatgcttggcaactagcagag
aggatgtcattaggtgcgctgattctcgagggaagtaacaaggacttctgggttatattg
ggttgtttgtctacaaatcatgcattgaagcagcatgctcttattcgaggattgcagctg
gatatgtctctttctgcagcatgggcatacctggggaagctctatagaaaattaggcgaa
aaacaattggcaaggaaagcatttgatcatgctagaagcattgatccttcactagcatta
ccatgggctggcatttcagttgactctcatggcagctcacaatccgaggcttatgaaaac
tgccttcgtgctgtgcagatactgcctctcccaaaatttcaagttggtcttggagcactt
gcaattccttctggtcaactactatctcctaaggtatttggagccatacgccaggctatt
cagcgagcgccttactctcctgaggcacataatttaaatggcttgctatgtgaagcacga
tcagattaccagtctgcgatcactgcctatcagcaagcccgatgtgctttgcatatggag
cacaattcagtggcagacctgagatctcatattgctgatgtgtcagttaatcttgccaga
gcactcattaaggcaggacatgcaaataatgctgcagaaatgtgtgattatttgaagaaa
gaaggtttgtttgatagcaagggcttgcaaatctatgctgttgcattgtggaaaattgga
cagtatgaccaagctctctccatggcaagaaatttggctcaaagtgtctcaaccatgaag
caaacatgtgcagctgctgcgctggggttgatatgcagtttgatatacagaatttcagga
agggattctgcagttgcaaccattcaaaaatttcctcctgaacttttacaaagtacaaga
atgatgtttacgctctctgcgctgaatgctctagacccaagcaatcagttgcagctgctt
cttccaagtcctcaaaatgttaaatctcgtgatgtggtcactgagatttactccataatt
gctatcagcaaaatgatcggccatggattaaaacaaaatttggatattgacggtggggtg
gattacctgagaaaagctcttcatttgtatcccaacagtagtttaataagaagccagctt
agttcacttctactatccagtggagattggatggcttcccacaaagcagctagatgcact
gccacaccaaatggacacattgttaagaaagaattagaattgtcatataaaattcatggt
gctgcagttgttgcttgctatgctagctgttccaacaatccaaagttttcttttccaacc
tgcaaagaccagcctgcacatggaacaaatgtcatacacagtatgcaaagatggttgcat
caagaaccgtggaacttggatgcacactaccttcttgtacttaatgttctacaaaaagct
cgtgaagaaaaatttcctcaacatctctgttctactttgaaacgtctacttttagttgct
ctgtccaaagaaatatatatgaaggaaaataaactacatcagtatcaaaagtttgtgctt
ctgctctgtgcttcagaggtcagtttgcagtgtggtgactatcatggtggtgtcaagcat
gctactgatgcattaggaattcttcctcccaacagtgatcccttttttgcacgcttacaa
ttgtgtcgtgcttatgcagcaggagaggattttttgaaccttaaaaatgagtacatgaat
tgcttgcagattaagacatttaatcaaattggttggatatcactaaaatatattgaatcc
agataccaattgcaaaacaattcaaatgcaatagatatgtactttcatatgtgctccaca
gggaaaggggcttcctcaaatatatgggaggctgtcttttatttagcctgtgctcaatcc
tttatatgggatcaggattacttacgtgcggaacaagctttagcacatgcctgtgcaata
ggagatgcggagagctgcctcttactctttcatggtgccgtctccatggagcttgctagg
caacaaccaggtcctcaatttttatcccgtgcagtaagcagcctcaccaaggcccaggag
acctcacctgttcctttacctattgtttccttgttgttggctcaagcagaagctagcctt
ggtgcaaaagctaagtgggagaggaaccttcgagtcgaatggttctcttggccagcagaa
atgaggcctgctgagttgtatttccaaatgtacttgcttgcaaggcagttgaatgcaagc
tccagccaacattctggcatagaatccatgcaaatcccaaagaattgggttcttcaagca
gtacatttgaatccatcttgtctgagatactggaaggttttgcagaagctttctgaggga
tag
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integrated database retrieval system
