Phoenix dactylifera (date palm): 103713912
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Entry
103713912 CDS
T03274
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103713912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103713912
Enzymes [BR:
pda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103713912
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103713912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
zf-C2H2_ZNF462
Motif
Other DBs
NCBI-GeneID:
103713912
NCBI-ProteinID:
XP_008799184
UniProt:
A0A8B7CH41
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Position
10:complement(11555533..11565979)
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AA seq
609 aa
AA seq
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MVASSGKHRWGGAVKQITKSNFSAALQQIKVHIQDADFIAVSSQKTGDLAASSSHRYPWR
RILPIDIAETAYLKAKLAAETFELLQFAVCPFRFQGSKVVAFPYNFHLFPRDELNLGMPS
YSFSCQTSFLASMAREGFDFNVSIYDGISYLSRAQESIAKERTTPRVYSSSSSPSPSVAD
SIFIGRIKSRVENWRNACKDPCNMADGSLAKSLRKLILGGEVYGSRPSLSIDVCSDRQVQ
LALEMVTHISDDLVPLVVPDKSGGAKSVRVVLTSSEEDKNLLMSEIQNLEEEQNLKVRGF
REVIDLISSSKKPIIAYNCLHDFTFIHSKFISPLQPSLNEFMCSLRLVFSNIVDVSHLLK
EIGPLRKARNLPAALSYLKRQFFVPIDVEIPQLADGNSNNNHGHNVLKLTRVFAKLGILL
KIVPDCQTSLGQHTVPIEEYANIFYPISNSLQESEADDVDFHMDNVRKISTDDLVFIWGF
REGTSAAELKNHLRQTHSVFSEDIELQLVDKTCAVVVFQKSGSAEALLKEIGSGMTNSTA
PSKIISEGLKAAGYEAYKKVCRLGMWEAELADSLDCALSEPSGDLTISSGEDASEIYWSS
ESMIDLNDL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgagcagcgggaagcaccgctggggaggcgccgtgaagcaaatcaccaaatcg
aacttctccgcagccctccaacagatcaaagtccacatccaggatgccgacttcatcgcc
gtctcctcccagaagaccggagacctcgccgcctcctcctcccaccgctatccctggcgc
cgcatccttcccatcgacatcgccgagaccgcttacctcaaggccaagctcgccgccgag
acctttgagctgctccagtttgccgtctgccccttccgcttccaaggctccaaagtcgtc
gccttcccgtacaactttcatttgttccctcgagatgagctaaatttgggcatgccttct
tacagtttttcatgtcagacttcatttctggcatctatggctcgagaaggttttgatttc
aatgtcagcatttatgatggtatatcatatttatccagagctcaagaatccattgcaaaa
gagagaactactcctcgtgtctattcatcatcttcctctccaagtccatcagttgctgat
tcaatttttattggaagaatcaagtctagagtagagaactggaggaatgcttgtaaagat
ccatgcaacatggcagatgggtctctagctaaatccctgcggaaactcatcctaggtggt
gaagtttatggttcaaggccctccttgagcattgatgtctgcagtgatcgtcaagttcag
ctggctttggagatggtaactcatatttctgatgaccttgtacctctagttgttccggac
aaatctgggggtgccaagtcagtacgggtggtgctgactagttcagaggaagataagaat
cttctcatgagtgagattcaaaatcttgaggaagaacagaacctgaaagtccgtgggttc
cgagaagtgattgatctgatctccagttccaaaaaaccaattattgcctacaattgtcta
catgattttacattcattcattcaaagtttatttcccctttgcaaccaagcctgaatgaa
tttatgtgctctttgaggttggtcttctctaatatagttgatgtcagccatctgttgaag
gaaattggccctttgagaaaagcaaggaacctacctgctgctctcagttacttaaagagg
cagttttttgtgcccatagatgtggaaattcctcaacttgctgatggaaatagcaacaac
aaccatggacataatgtcttgaaactaacacgagtgtttgcaaaactcggcatcttactg
aaaatagttcctgattgtcaaacttcacttggacagcacacggtgccaattgaagaatat
gcaaacatcttttatcccatttctaatagccttcaagaaagtgaggctgatgatgttgat
ttccatatggataatgtgaggaaaatcagtactgatgacttagttttcatttggggattt
cgtgagggaacttctgctgcagaactaaaaaaccaccttcgacaaacccattctgtgttc
tcagaagacattgaattgcagttggtggataagacgtgtgcagttgtggtttttcagaag
tcaggttctgcagaggctttactaaaagaaataggatccggaatgactaattctactgct
ccgtccaaaataatctcagaagggctgaaagcagcaggctatgaggcttataagaaggtt
tgcaggttgggtatgtgggaggctgaattagctgattctttggattgtgcattgtctgaa
ccttctggtgatctcaccatttcttctggggaggatgcctccgagatttactggagcagt
gaatcgatgattgatctgaatgatctttag
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