Phoenix dactylifera (date palm): 103714100
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Entry
103714100 CDS
T03274
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103714100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103714100
Spliceosome [BR:
pda03041
]
Complex B
Other components
Prp19-related factors
103714100
Complex C
103714100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH_4
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
103714100
NCBI-ProteinID:
XP_008799458
UniProt:
A0A8B7CHX9
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Position
9:2993414..3002667
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AA seq
475 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMSRADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYARGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPEDEGIRTLYVGGLDARVT
EQDLRDHFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEDLANKLVIKGMRLKLMWGK
PQASKPEGEVPDDEAARQGLVAHGGMLPRAVISQQQSNQQPQPPGTQDQQQPPLHYFNIP
APPPAERTFYPSMDPQRMGALVPSQEASDSKGGSDKQPLLRAPNSSGQAYPVMPPHLQGQ
YPQFYAPYGYMAPAPPPYQQQYPPYQSMMAPPPPPPAPPAVQQYPSGAPGSSSQS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgagagacgcgcaggccgacggatgggagcgctccgacttcccc
atcatctgcgaatcctgccttggcgacaacccctatgttcgaatgtcaagggcagattat
gacaaggagtgtaagatctgcacacgaccatttacagtcttcaggtggagaccgggacgc
gatgcaagatacaaaaagacagagatctgccagacatgctgtaagctgaaaaacgtgtgc
caggtctgcctcctggatcttgagtatgggttgcctgttcaggttcgggacactgccttg
tctatcaattccaatgatgcaatcccgaagagcgacgtgaatagggagtactttgcagaa
gagcatgaccgcagggctagagctggcattgattatgagtcttcatatggaaaggcgcgt
ccaaatgacaccattttaaagcttcaaaggacaacaccatattacaaaaggaatcgggca
catgtttgtagcttttatgcgcgtggtgaatgcacacgcggtgctgaatgtccatatcgg
catgagatgcctgttactggggagttatcccagcagaacataaaagatcggtattatggg
gtgaatgacccagtcgctctgaagctgttaagcaaggcaggtgagatgccatctctgacg
cccccagaagatgagggcataaggacactgtacgttgggggccttgatgcccgagtcacc
gagcaggatctgagggatcacttctatgcccatggcgagattgaatcaatcaggatggtg
ctccaacgagcatgtgcctttgtgacatacacaacaagagaaggagcagaaaaggctgca
gaggacctagccaacaaactcgtcattaaagggatgcgtctgaagctgatgtggggaaag
cctcaggcctccaaaccagagggggaggtaccagacgatgaggctgcaaggcaagggctc
gtggcacacggagggatgcttccaagagctgttatatcccagcagcaaagcaaccagcag
cctcaaccaccaggcacacaggaccagcagcagccaccactgcactactttaacattcca
gcgccgcccccagcggagcgaaccttctacccctcaatggatcctcagagaatgggtgct
ctagtaccgtctcaggaagccagcgacagcaaggggggatcagacaagcagccactgctg
cgggcaccaaatagctcagggcaagcctaccctgttatgccgccccatcttcagggccag
tacccacagttttatgcaccatatgggtacatggccccagcaccgccaccttatcagcag
cagtatcctccttaccagtcaatgatggctccgcccccgcctccacctgcgcctcctgca
gtgcagcagtacccttcaggtgcgcctgggtcgtcttctcagagctga
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