Phoenix dactylifera (date palm): 103715290
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Entry
103715290 CDS
T03274
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103715290
09123 Folding, sorting and degradation
03018 RNA degradation
103715290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103715290
03041 Spliceosome [BR:
pda03041
]
103715290
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103715290
mRNA degradation factors
5'-3' decay
Lsm complex
103715290
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103715290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
103715290
NCBI-ProteinID:
XP_008801092
UniProt:
A0A8B7CKJ8
LinkDB
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Position
3:complement(9580057..9589034)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETTKSRSDRKPPGVGRGRGRGREEGGSGRPAKGIGRGQD
DGGKGGRGKGGSSGKVGGGRGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctatcgctcctgaagacggctcaagggcatcccatgctggtggagctgaag
aatggggagacgtacaatgggcatttggtgaactgtgatacctggatgaacattcacctt
cgtgaggtcatttgtacttcgaaggatggagataggttttggagaatgcctgaatgctac
attcgagggaacaccattaagtatcttcgagttcctgatgaggtaattgacaaggttcaa
gaagaaactaccaagagccgttcagacaggaagccacctggtgttggccgtggaagggga
agaggtagagaggagggtggcagtggtaggcctgccaaaggcattggacggggccaggac
gatggtggcaaaggaggtcgtggcaagggaggaagcagcggtaaagttggtggtggcagg
ggcggagggcgtggccgtggctga
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