Phoenix dactylifera (date palm): 103715356
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Entry
103715356 CDS
T03274
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103715356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103715356
03019 Messenger RNA biogenesis [BR:
pda03019
]
103715356
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103715356
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103715356
U7-dependent histone pre-mRNA processing factors
103715356
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
103715356
NCBI-ProteinID:
XP_008801179
UniProt:
A0A8B7CKQ3
LinkDB
All DBs
Position
14:10603639..10617281
Genome browser
AA seq
696 aa
AA seq
DB search
MASTMTGGQGSALKRRESTATREGDRLTITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP
AYSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL
LLSDYVKVSKVSVEDMLYDEQDILRTMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMF
MVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRLIREKRFTDV
IHSTVSQGGRVLIPAFALGRAQELLLILDEYWSNHAELHNIPIYYASPLAKRCMAVYQTY
INSMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPGGLQSGLSRQLFDKWC
TDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTSPLNMQVYYISFSAHADFAQTSTF
LKELMPPNIILVHGEANEMARLKQKLITQFADRNAKIISPKNCQSVEMYFSSEKMAKTIG
RLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHIFSQLSTANITQRISVPYSGAFGVIKH
RLKQIYESVEAPSEEPDVPTLIVHERVTIRQESENYVTLQWSSDPISDMVSDSVVAMILN
ISREGPKVTAVAEAKKTEEETEKMAQKVIYALFVSLFGDVKIGEEGTLVVTVDGDVARLD
GKNGEVECENEGLKERVKTAFRRIQSAVRPIPLSAS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaccatgaccggcggccagggctcggccctgaagaggcgggaatctacggcg
acgagggaaggggatcggctcaccatcaccccattgggcgccggcaatgaggtggggcgc
tcctgtgtgtatatgtcctacaaagggaagaccatcttgttcgactgtggaatccatcca
gcgtactcggggatggctgccttgccatattttgatgagatcgatccttcgactatcgac
gtgcttcttgtgactcactttcaccttgatcatgctgcctcattgccatactttctggag
aagactactttcaagggccgggttttcatgacgcatgcaactaaggctatttacaggttg
cttttgtcagattatgtgaaagtgagcaaagtttctgttgaggatatgctgtatgatgag
caagatattcttcggacaatggacaaaattgaggtcattgacttccaccagacacttgaa
gtgaatggcattcgcttttggtgctacactgctggtcatgttctgggtgctgccatgttc
atggttgatattgctggtgtccgggttctatacactggtgactactctcgtgaagaggac
cgccatctccgagctgcggaaattccacaattctcccctgatatctgtatcatcgagtcc
acctacggtgtccagctccaccagccccgcctcatccgagagaagcgctttacagatgtc
atccactcaaccgtctctcaaggtggccgtgtgcttattccggcttttgcccttggcaga
gcccaagaactcctcctcatcctggatgagtactggtctaaccatgcagagctccataac
attcccatctactatgcctcccctcttgccaagagatgcatggctgtctaccagacctat
ataaattccatgaatgagaggattcggaaccagtttgcaaactcaaacccattcgatttt
aagcacatctctccgttgaagagcatagagaactttgatgatgtgggtccatcagtggtt
atggcaagtccaggtggcctccagagtgggctttctagacaactgtttgataaatggtgc
acagataaaaagaatgcttgtgttattcctgggtatgttgtggaagggacactcgcaaaa
accatcatcaacgagccaaaagaagtcaccctaatgaatggcctcacttctcctctcaac
atgcaggtatattacatctccttctcagctcatgcggatttcgcacagacaagcaccttc
ttaaaggagctcatgcctcccaatataattcttgtccatggagaagccaacgagatggca
aggcttaagcagaagcttataacccaatttgctgataggaatgctaagatcatttccccc
aagaactgccagtcagtggagatgtattttagttctgaaaaaatggccaaaacaattgga
aggctggctgaaaagacaccagaagttggggaaactgtcagcggcttactggtcaagaag
ggctttacatatcagataatggcaccggatgatctccatatcttctcacagctgtccaca
gcgaacatcacccagaggatctctgtcccttattctggtgctttcggagttataaagcat
aggttgaagcagatatatgagagtgtggaggccccatcagaagagcctgatgtaccaaca
ttgattgtgcatgaaagggtgacgataaggcaggagtcagagaactatgtgacattgcag
tggtcatcagaccccataagcgacatggtttcggactctgtagtagctatgatcttgaat
attagccgagaaggtccaaaggtgacagcagttgcagaggccaagaagacagaggaggaa
acagagaagatggcgcagaaggtaatatatgctctttttgtatccttgtttggggatgtc
aagattggagaggaaggaacactggttgtgactgtcgatggggatgtggcgcgtctggat
ggcaagaatggtgaggtagaatgtgagaatgaggggttgaaggagagagtaaagacagca
ttcaggcggatacaaagtgcagtgagaccaatcccgctatcagcgtcttga
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