Phoenix dactylifera (date palm): 103715421
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Entry
103715421 CDS
T03274
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
pda04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103715421
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103715421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103715421
04121 Ubiquitin system [BR:
pda04121
]
103715421
03400 DNA repair and recombination proteins [BR:
pda03400
]
103715421
Enzymes [BR:
pda01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103715421
Spliceosome [BR:
pda03041
]
Complex B
Other components
Prp19 complex
103715421
Complex C
Prp19-CDC5 complex
103715421
Ubiquitin system [BR:
pda04121
]
Ubiquitin ligases (E3)
U-box type E3
103715421
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
103715421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_TEP1_C
NBCH_WD40
U-box
Beta-prop_DCAF4
zf-Nse
WD40_like
PEP5_VPS11_N
KNTC1_N
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
103715421
NCBI-ProteinID:
XP_008801251
UniProt:
A0A8B7CKU0
LinkDB
All DBs
Position
2:2493820..2511643
Genome browser
AA seq
526 aa
AA seq
DB search
MICAISGEVPEEPVLSKKSGLLFERRLIERYIADYGKCPVTKEELTMDDILPVKTNKVVK
PRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARILLAQAERQIPSSIASAANANNIVSNGKRAAEEELGPDGKRIRPGINPAMIAEL
TECNAMLSGQRKKRQISPTLAPIDALERYTQISSHPLHKTNKPGIVSVDIHPSKDIIATG
GIDTNAVVFDRSAGQIICTLTGHSKKVTSVKFVPRDELFISGSGDKTVRVWQGTEDGNYN
CRHILKDHSAEVQAVTVHATHKYFVTAALDNTWCFYDLATGSCLSQVGEASGEEGYTSAA
FHPDGLILGTGTSEALVRIWDVKSQSNVAKFDGHVGAVTALSFSENGYFLATAALDGVKL
WDLRKLRNFRSFTPYDSDTPTNSVEFDYSGNYLAIAGSDARVYQVASVKMEWNQIKTLAD
LSGTGKVTCVKFGADAKYMAVGSMDRNLRIFGLPGDGPEEPRSPDH
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtgcgatctccggagaagtgccggaggaaccggtgctatcgaagaaatccggg
cttctgttcgagcgccggctgatcgagcgctacattgcggattatgggaagtgccctgtt
acaaaggaggagctcacgatggatgatatcttgcccgtgaagacgaacaaggtggtgaag
cctagacccttgcaggctgcaagcatccctgggctgcttggaatgttccaaaatgagtgg
gatgctttgatgctctccaattttgctctggaacagcagttgcatacagcaaggcaagag
ctaagtcatgccctataccagcacgatgctgcatgccgtgttatagcaagactaaagaag
gaaagggatgaggccagaattctcttggctcaggctgaaagacagattccgtcatctata
gcatctgctgctaatgcaaacaatattgtcagcaatgggaaaagagctgcagaagaggag
ttaggccctgatgggaagagaattcgtccaggtataaatcctgctatgattgcagaactt
acagagtgtaatgctatgctttcaggacagcggaagaagcggcagatttcaccaacattg
gcacccattgatgcgctggagagatacacacaaatctctagccatccccttcacaagact
aacaagccaggcattgtatctgtcgatatccatccttcaaaggatataattgcaactgga
gggattgatacaaatgcagtagtttttgataggtcagcaggtcagatcatatgtacactc
actggccactcaaagaaggttaccagtgtgaaatttgtacctcgagatgagctttttatt
tctggatcgggagataagactgttcgtgtttggcaagggactgaagatgggaattataat
tgtcgacatatcttgaaggaccatagtgcagaggtacaagcagtcacagtccatgcaact
cataagtactttgtgactgctgctttggacaacacttggtgtttctatgatcttgctact
ggatcatgcctctctcaggtgggtgaagcttcgggagaagagggctacacttcagctgcc
tttcaccctgatggtctaatccttggaacaggaacttctgaagctcttgttagaatttgg
gatgtaaaatctcagtcaaatgttgcaaaatttgatgggcatgttggagcagtcactgcc
ttgtcgttttctgaaaatggctatttccttgcgactgcagctcttgatggtgttaagctg
tgggatcttcggaagctgaggaatttcagatcctttactccctatgactcggatactccg
acaaactctgtggaattcgactatagtggaaactatcttgcaattgcgggttcggatgca
agggtctaccaagttgccagtgtaaagatggaatggaatcagattaagacactcgctgat
ttatcaggcacaggaaaagtgacatgcgttaagtttggagcggatgcaaaatacatggct
gttggttctatggaccgtaatctccgaatctttgggctcccaggggatggcccagaggaa
cccagatcaccagatcactga
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