Phoenix dactylifera (date palm): 103715761
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Entry
103715761 CDS
T03274
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103715761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103715761
03009 Ribosome biogenesis [BR:
pda03009
]
103715761
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103715761
Spliceosome [BR:
pda03041
]
Complex A
U2 snRNP components
U2 related factors
103715761
Complex B
103715761
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103715761
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
90S particles
Helicases
103715761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
Flavi_DEAD
AAA_30
T2SSE
AAA_7
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
103715761
NCBI-ProteinID:
XP_008801724
UniProt:
A0A8B7CLM4
LinkDB
All DBs
Position
1:complement(1526615..1535144)
Genome browser
AA seq
730 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAKLARANGSAPGRVAAAAPAVPPGINRWSGRPYSARYYE
ILEKRRTLPVWQQKDEFLQVLKANQSLILVGETGSGKTTQIPQFVLEAEDLGKRPMVACT
QPRRVAAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSQKTILKYLTDGMLLREAMADPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLRNRPELKLVVMSATLEAEKFQGYFSGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKE
VNNLGDQVGPVKVVPLYSTLPPALQQKIFEPAPAPLMEGGPPGRKILVSTNIAETSLTID
GIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFS
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
EGNLTKLGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSISAMLSVPNCFLRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINQRTLKAADNVRQQLARIMARF
NLKLCSTDFNSRDYYVNIRKSLLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSTCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWLIDISPHYYDLSNFPSCEAKRVLERLYNKREKEK
GESKARNKAT
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagaggaagcggaaggtgagccttttcgacgtggtggacgagacctccgta
tcggcgaagctggccagggcaaacggttctgcccccgggagggtggcggccgcggccccc
gcagtgccgcctgggatcaaccggtggagcggccggccctactcggctaggtactacgag
atcttggagaagaggaggaccctcccggtctggcagcagaaagacgagttcttgcaggta
ctcaaggccaaccagagcctgatcctcgtaggagagaccggcagtggcaaaaccacccag
attcctcaatttgttttggaagctgaggacttgggcaaacgccccatggttgcttgcacg
caacctcgcagggttgctgcaatgtctgtttctcgtcgagttgctgaggagatggatgtg
gcaataggagaggaagttggttacagcattcggtttgaagattgtagtagtcaaaaaact
atactgaagtacttaactgatggtatgcttctaagagaggcaatggctgatccacttcta
gagagatataaggtgataattcttgatgaggctcatgagcgaactttagcaacagatgtt
ctatttgggcttctgaaagaggttttgagaaatagacctgagctgaaattagttgtaatg
agtgcaacacttgaggctgagaagtttcaggggtatttcagtggggcacctttaatgaag
gtacctggaagactgcatccagtggaaattttctatacacaggaaccagagagggattat
ctggaagctgccattcgaacagtggtgcagattcacatgtgtgaacctccaggagacata
cttgtttttcttactggagaggaggaaatagaagatgcatgtaggaaaattacaaaggaa
gttaataacctgggtgaccaggttggccctgtgaaagtagtaccattgtattctacattg
cctccagcattgcagcagaagatttttgaacctgctccagccccgttaatggaaggtggg
cctcctggaaggaagattttggtgtcaaccaacattgcagaaacatctctgaccatagac
ggtatagtttatgtgattgatcccggcttctccaagcaaaaagtgtataacccaaggata
cgtgtggagtccttgctggtctctccaatatcaaaggcaagcgctcatcagaggtcagga
cgtgctggtagaacacagcctggaaaatgttttagactttatactgagagaagcttcagc
aatgatttacaaccacagacatatccagaaattctccgttctaatttggcaaatacagtt
cttaccttgaaaaaacttggaattgatgatttggtacattttgactttatggatcctcct
gctcctgaaaccttgatgcgggcattagaggttctgaactatctgggtgccttggatgat
gaagggaacttgaccaaattaggtgaaatcatgagtgagttccccttggaccctcaaatg
gcaaagatgcttattgtcagccccgagttcaattgttccaatgagatcctctctatatct
gcaatgctctcagtacccaattgctttctccggcctagggaggctcagaaagctgcagac
gaagcaaaagctcggtttgggcacatcgatggggaccacctaacgcttctgaatgtttat
catgcttacaagcaaaacaatgaagacccttcatggtgttatgagaattttattaaccaa
aggacgttgaaggctgctgacaatgtgagacaacagcttgcacgcattatggccagattc
aacctcaagctatgcagcacagatttcaacagccgtgattattatgtcaacattagaaag
tctctgctctcggggtacttcatgcaggtagctcatcttgagcgtactggacactacttg
actgtgaaggacaatcaggttgttcatctccacccttcaacctgcttggatcataaaccg
gagtgggtcatctacaatgagtatgtattgactagcaggaacttcatccgcacagttaca
gatattcgtggagaatggttaattgacatttctccccactattatgacctcagcaatttt
ccttcctgcgaggcaaaacgggttttggaaaggctgtacaataagcgcgagaaagagaaa
ggcgagagcaaggccagaaataaagccacataa
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