Phoenix dactylifera (date palm): 103716250
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Entry
103716250 CDS
T03274
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103716250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103716250
04121 Ubiquitin system [BR:
pda04121
]
103716250
03036 Chromosome and associated proteins [BR:
pda03036
]
103716250
03400 DNA repair and recombination proteins [BR:
pda03400
]
103716250
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103716250
Ubiquitin system [BR:
pda04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
103716250
Chromosome and associated proteins [BR:
pda03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103716250
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103716250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4_2
zf-RING_6
zf-C3HC4_3
zf-RING_10
PHD_NSD
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
PTCB-BRCT
zf-C3HC4_4
RTT107_BRCT_5
PIG-L
Motif
Other DBs
NCBI-GeneID:
103716250
NCBI-ProteinID:
XP_038972945
UniProt:
A0A8B8ZFN6
LinkDB
All DBs
Position
2:2173388..2180674
Genome browser
AA seq
676 aa
AA seq
DB search
MADLEGFRRLLNPLVLNLQKMELELTCPICLKLLNMPRLLPCNHISCSPCVTTSTMHGHD
CPICKVPFHHQDLRPAVHVEIMVNIYKSMNSAIGPILVQRGEQVAISDTKMPSGGSPDFG
DRNDEEKSEEELMHNRAGEGSKYMPSHAPFFGNFRTGNPRCEGEKNEPAMNVSKKDVKNN
GVEAFLKEEDPYSPQSSGDQKDSDYDSNDLGNEPRNGNDSCKRGSKVGTIQTGEDYNREL
KRQKLHNAVDVGDISGDVQAKDFSVFNSESEHEHQRCPNIKSLHTTVHEDTNGVFSCAFC
YSSRTTEASGPMLHYIDGKPVSDDQALQLNVLHVHQKCIEWAPQVFFVGETAVNLEAELL
RASKIKCSSCGLKGAALGCYVKSCRRSFHVPCAADIQDCRWDAENFLLLCPVHFSHKLPC
DRSKARKRTKANRSLCYSSSPGDLTSPTKQQSDKLWTASPGVTQEWLLCGSSLSNLEKDI
LNDFVSLTGASVTNTWKPNVTHVIAATDEHGACSRTLKLLMAILGGKWVLSVEWLKACMK
AGHPVPEEPHEISHDIHGAFDGPRNGRIRAIQKAPKLFTGLTFYFSGHFMPYYKDHLEDL
ILAAGGTVLEKSEITPTTSIVYSTEPPQGSNSDDQHEVIKKRKEEAVDLASRIGSLVIPH
TWLLDSIASCNVQLNL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctagagggtttcaggagattgctaaaccctttggtacttaatctgcagaag
atggagttggagctcacgtgtcccatctgtttaaagttgcttaacatgccaaggttgttg
ccatgtaatcacatttcgtgcagtccttgtgtcactacttcaaccatgcatgggcatgac
tgtcctatttgtaaagtaccttttcatcatcaagatttgaggcctgctgttcatgttgaa
ataatggtgaacatatataaaagcatgaattcagctattggtcctatccttgtacaaaga
ggggaacaagttgctatctctgacacaaagatgccttcaggtggtagtccagattttggt
gacagaaatgatgaggagaaatctgaagaggaactgatgcataacagggctggagagggt
tcaaaatatatgccatcacatgcaccattttttgggaattttagaactgggaatccaaga
tgtgaaggggagaaaaatgagccggcaatgaatgtaagcaagaaagatgtgaaaaacaat
ggagtggaagcatttcttaaagaagaggatccatacagtccacaatcatctggtgaccag
aaagattcagattatgacagcaatgacctgggaaatgaacctagaaatggtaatgattca
tgcaagagaggttcaaaagttggaactattcaaacaggagaagactataatagagaatta
aaaaggcaaaaattgcataatgcagttgatgttggagatattagtggtgatgtccaggct
aaggatttttcagtatttaattctgaatctgaacatgaacatcaaagatgcccaaacatc
aagtcattgcatacaactgttcatgaagacacaaatggggtttttagttgtgcattttgc
tattcttctagaacaactgaggcttctggaccaatgttacattatatcgatggaaaacca
gtgtcagatgatcaagcattgcagctcaatgtcttacacgtgcatcagaaatgcattgaa
tgggcaccacaagtattctttgttggtgagactgctgtgaatttagaggctgaactttta
cgtgcatcaaaaatcaaatgtagcagctgtggactcaagggagcagctcttggttgctat
gtcaagagctgccgaagaagctttcatgtcccatgtgctgctgatatccaagattgtcga
tgggatgctgaaaattttcttttgctgtgtcctgttcatttttcacacaagctgccatgt
gatagatcaaaggctagaaagaggacaaaggctaatcgttccttatgctattccagttca
ccaggtgatttaacttcacctacaaagcaacagagtgataagctttggacagcttcaccc
ggtgtgactcaagaatggttgctatgcggatcttcactctctaacttggagaaggatatt
ctaaatgactttgtgagcctaactggtgcctctgtaaccaatacgtggaagccaaatgta
acacatgtgattgctgccactgatgagcatggtgcttgcagcagaacacttaagttgctc
atggctatattgggtggaaaatgggttctaagtgtagaatggcttaaagcatgcatgaag
gctgggcacccggttccagaggagcctcatgaaatcagccatgacattcatggagccttt
gatggacccagaaacggaagaataagagctatacaaaaggcaccaaaactgtttacagga
ttaaccttttattttagtggtcactttatgccatactacaaggaccatcttgaagatttg
attcttgctgctggtggaactgtattggagaagagtgaaatcactcctacaacttctatt
gtttatagtacagaacctccgcaaggaagcaattcagatgatcagcatgaggttataaag
aagagaaaagaagaggccgtagatttagcatccagaattggctctctggtcatccctcac
acatggcttctggattccattgcttcctgcaatgtacaactaaacttgtag
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