Phoenix dactylifera (date palm): 103716252
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Entry
103716252 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103716252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103716252
03012 Translation factors [BR:
pda03012
]
103716252
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103716252
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103716252
Translation factors [BR:
pda03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103716252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
BEX
AAA_19
NACHT
Prefoldin_2
ATPase
Motif
Other DBs
NCBI-GeneID:
103716252
NCBI-ProteinID:
XP_008802397
UniProt:
A0A8B7CMM4
LinkDB
All DBs
Position
2:2156069..2171355
Genome browser
AA seq
1037 aa
AA seq
DB search
MSVGCGHRTLAYWTNPLRLRLPLGIALRHPCAMSYRPNYQGGRRGGGGRGGGGGGRGGGG
RGGGGGRGGGGRGGGGGRGEQRWWDPQWRAERLRQMAGEVEKLDENEWWNKIKQLKEGGQ
QELIVKRNFGRDGQNVLADMAQRQGLHFHAYNKGKTLVFSKVPLPDYRADLDERHGSTQK
EIKMSTETERRVENLLARSKETLTINDTASTSIQMARQSVPNMAVSKPELTEDDNAFKEK
FNIELRDLQHSRKATPSARAMQSFREKLPAFKVKDEFLKAIADNQVLVVSGETGCGKTTQ
LPQFILEEEIERLRGAECNIICTQPRRISAISVAARIASERGENLGETVGYQIRLEAKRS
AQTRLLFCTTGVLLRRLVQEPYLGGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRL
ILMSATINAELFSTYFGNAPIIHIPGLTYPVAEAFLEDVLEKTRYKIKSEFDNFQANSRR
RRRQPSTKNDPLTEMFEDVDIDAQYKNYSISTRQSLETWDGVQLDLGLVEATIEYICRHE
KDGAILVFLTGWDEISKLLDKIKGNSFLGNSSKFLVLPLHGSMPTVNQREIFDRPPSNMR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGVCYRLYPKVIHDAMPQYQLPEILRTPLQELCLNIKSLQLGAVATFLAKALQPPDPL
SVKNALELLKTIGALDEMEELTPLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAAL
AHRDPFVLPMNRKEEADAAKRSFAGDSCSDHIALLKAFGAWKDAKCSGRERAFCWENFLS
PMTLQMMEDMRNQFLDLLSDIGFVNKARGVKTYNQYGDDLEMVCAVLCAGLYPNVIQCKR
RGKRTAFYSKEVGKVDIHPSSVNAGVHLFPLPYMVYSEKVKTTGIYIRDSTNISDYALLL
FGGSLMPSKTGEGIEMLGGYLHFSAPKSIVQLIQRLRGELDKLLQRKIEEPGLDIPAEGK
AVVAAAVELLHNQNVYH
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttggctgtggtcaccgcaccttggcttattggacaaaccctctgcgtctccgt
cttcccctggggatcgctcttcggcatccttgtgccatgtcgtaccgccccaactaccag
ggcggccgcagaggcggcggcggaagaggtggaggcggcggcggaagaggaggcggcgga
agaggtggcggcggcggcaggggcggcgggggaaggggtggcggcggaggccgcggggag
cagcggtggtgggatccccagtggagagccgagcgcctccggcagatggccggcgaggtg
gaaaagctggatgagaatgaatggtggaacaaaataaaacaattgaaggaaggcgggcag
caggagctgatagttaagcggaatttcgggcgtgatgggcagaatgttcttgcagatatg
gctcaaagacaaggcctgcacttccatgcatacaacaaaggaaagacacttgtgtttagc
aaagttcctttgccagattaccgggccgatcttgatgaacgacatggatcaacacagaaa
gagattaagatgtctacagagactgagagaagagtggaaaacctcttagctagatcaaaa
gaaacattgactattaatgataccgccagcacatccattcagatggccagacaatctgtg
cctaacatggctgtatctaaacctgaattaacagaagatgataatgccttcaaggagaag
ttcaatattgaacttagggacttgcaacactctcggaaggcaaccccaagtgcaagagca
atgcagtctttcagggagaaactaccagcattcaaagtgaaagatgaatttttaaaagct
atagcagataatcaggtacttgttgtatctggagagactggttgtggcaaaactacacag
ctacctcagttcatactggaggaggaaatagaacgtcttcgtggggcagagtgcaacata
atatgtactcaaccacgtcgaatatctgctatatctgttgcagcacgaattgcatctgaa
aggggtgagaatcttggagaaactgttggttaccagatccgattggaagcaaaacgttca
gctcaaacacgtcttctattttgcacaactggagtactgcttcggagactggttcaggag
ccatatttaggaggtgtcagtcatttactggtggatgaaattcatgaaaggggtatgaat
gaggatttccttattataattttgcgtgaccttctgcccaggcgtccggatcttcgtcta
atattaatgagcgccacaataaatgctgagctcttctctacatactttgggaatgcacca
atcatccatataccagggctgacttatcctgtagcagaagcgtttctggaagatgttctg
gagaaaacacggtacaagattaagtcagagtttgacaattttcaggcgaactcaagaaga
agaagaagacaaccatcaaccaaaaatgatccattgactgagatgtttgaggatgttgat
attgatgcccaatacaaaaactacagcatatctacaaggcaatctctcgaaacctgggat
ggtgtgcaactagatttgggtcttgtggaagcaacaatagaatatatttgccgccatgaa
aaagatggagcaatcctagtgttccttacgggttgggatgagatatctaagctgctcgac
aaaattaaggggaacagtttcctcgggaattctagcaagtttctagttcttccattgcat
ggttccatgccaactgtaaatcagcgcgaaatttttgacagaccaccaagtaatatgagg
aaaattgttctagcaacaaatatagcagaaagcagtattactatagatgatgttgtgtat
gttattgactgtgggaaggcaaaggaaacaagttatgatgctctgaataagttggcatgc
ttgttaccatcatggatatcaaaggcttcagcacatcagaggcgggggcgtgcagggcgt
gttcaacctggtgtttgctataggctgtacccaaaagttatacatgatgcaatgccacaa
tatcaattgcctgaaattcttcgaactccattgcaagaactatgccttaatattaaaagc
ctacagcttggagcagttgccacattcttagccaaggcacttcagccacctgatccactc
tccgttaaaaatgcactcgaacttctcaaaacaataggggcactagatgaaatggaggaa
ctcactcctctcggacgtcatctttgtacactgccattggatccaaatattggaaaaatg
ctgctcattggatctgtattccaatgtctagatccagcattgacaattgctgctgctctt
gcacatcgagacccatttgtcctaccaatgaacaggaaagaggaagcagatgctgcaaag
agatcctttgctggtgattcttgcagtgatcatatagctcttttaaaagcttttggagca
tggaaggatgcgaaatgtagtggaagggaacgtgctttctgttgggagaatttcttatcc
cccatgacattgcagatgatggaagacatgcgaaatcagtttcttgatttattatctgac
ataggttttgtaaacaaggctagaggagtcaagacatataaccaatatggcgatgatctg
gaaatggtatgtgctgtcctttgtgctgggctttatcccaatgtcatccagtgcaaaagg
agagggaagaggacagcattctacagtaaagaagttggaaaagtcgatatacatccatct
tctgtgaatgcaggggtccatttattccctttgccttacatggtttatagtgaaaaggtg
aagactacaggcatttatattagggactcgacaaatatatcggattatgctttacttctc
tttggaggaagcctcatgccgagcaagactggagagggcatcgagatgctaggaggctat
cttcatttctctgcaccaaaaagcatagtccaactaattcagaggttaagaggagaactc
gacaaacttctgcagaggaaaattgaggagccagggctcgatatccctgcagagggaaag
gctgttgttgctgcagctgttgagttattgcacaaccaaaatgtttaccactag
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