Phoenix dactylifera (date palm): 103716624
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Entry
103716624 CDS
T03274
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103716624
03015 mRNA surveillance pathway
103716624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103716624
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103716624
mRNA cycle factors
P-body specific factors
103716624
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
103716624
NCBI-ProteinID:
XP_008802922
UniProt:
A0A8B7CNQ8
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Position
1:complement(38414008..38427785)
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AA seq
570 aa
AA seq
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MVYGPEIAHMKDPLDRTKVVLRRLPPAISQATLMEEIDGRFAGRYKWFCFRPGKNSCSQK
NQHHSRAYIDFKRPEDVVEFAEFFDGHVFVNKKGSQFKVHVEYAPSQRIPKTWSKKDVRE
GTIIKDPEYLEFLEHLAKPAEYLPSAEIQLERREAERAGGQKDMVIVTPLMEFVRQKRVA
KSGSQRYSNGKLSRRSGGASSSGSKPSSRRSSEKRRVSTPMFVLRDSTMNISGKDKPTYI
LVSRKDDQQLLDKSIGVASASSIKVLEEEKGVEAGKKRILLLKAKEREDTHVSGGSSRQQ
NVSSVKKSGSYAFEQNQRHEARGRIIGSILSNKDSCQSYVTASQSEQQTPTVNLDKDKHP
PRPPNMCSMLKNHISSKPPLASIYDNEGKNSLDDKVAGNNLNGLVSTSEKHDRRTRNKDR
PDRAVWAPLRCSDGSHASDETLSSSAVPAQRSSSSCSSESISLSQQVARVKAGDDDVACL
GCLNNSSAGYDIPTSLGEIKAHVSNANQTAEVKTLGGSHRYIGRRGPVHGVKEVDASLNY
HEGKPSKRGGPAGYGSHERQVWVQKSGSGT
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggtttatgggccggagatcgcgcacatgaaagatccgttggataggacgaaggtcgtg
ctccggcgcttgccgccggcgatctctcaggcgacgctgatggaggagatcgacggcagg
ttcgctggccggtacaagtggttctgctttcgcccggggaagaacagctgcagccagaag
aatcagcatcattctcgagcctacatcgatttcaagaggccggaagatgtggtcgaattt
gctgaattctttgatggacacgtatttgtcaacaaaaagggttctcaatttaaagttcat
gttgaatatgcaccatcacagcgcattccaaagacttggtctaagaaggatgtccgcgaa
ggaactataattaaggatcctgaatatctggagttccttgagcatcttgcaaagcctgct
gagtatcttcctagtgctgaaattcagctggagaggagggaggcagaaagagctggtgga
cagaaggatatggtcatagtgacacctttgatggaatttgtgcggcaaaaaagagttgct
aagagtggatctcagagatattctaatgggaaacttagtagaagatctggaggagcttct
tctagtggctcaaaaccttcttccagacgaagctctgagaagcgacgggtctctacacca
atgtttgttttaagggacagtacaatgaatatcagtgggaaggacaaaccaacatatata
ttagtatctagaaaagatgatcagcagctgctagataaatctattggtgtagcttcagca
agttcaataaaagtattagaagaagaaaagggtgttgaagctggaaagaaaagaatcttg
cttttgaaagcaaaagagagagaagacactcatgtatctggtggttcgtcacggcagcag
aatgtgagttcagtgaaaaagtctggttcatatgcttttgaacagaatcagcgacatgag
gctcgtggaagaattatagggagcattctgtctaacaaggatagctgtcagtcttatgtg
actgcatcccagtctgagcagcagactccaacagtgaacctggataaagacaagcatcca
cctcgtcctccgaatatgtgctcgatgctgaagaatcacatttctagcaagccgccactt
gcttccatttatgataatgaaggcaaaaattccctagatgataaggttgctggaaataat
ctcaatggtcttgtatccactagtgaaaaacatgatagacgcacaagaaacaaagacaga
cctgatcgtgctgtttgggctcctcttcgttgttcagatggatcacatgctagtgatgaa
accctttcttcctctgctgtacctgcacagaggtcctcatcctcatgttcgtcagaaagc
atctctctttctcaacaagtggctagagtaaaagctggagatgatgatgttgcttgttta
ggatgtcttaataattcatctgctggctatgacataccaacaagtcttggagaaataaaa
gcgcatgtgtctaatgcaaaccaaactgcagaagttaaaactcttggaggctcccataga
tatattgggcgccgtggacctgtgcatggtgtgaaggaagttgatgcttctctgaattat
catgagggaaagccttctaagagaggaggtcctgctgggtatggttcccatgagagacaa
gtgtgggtgcagaagtcaggttctggtacataa
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