Phoenix dactylifera (date palm): 103718149
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Entry
103718149 CDS
T03274
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03022
Basal transcription factors
pda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103718149
09124 Replication and repair
03420 Nucleotide excision repair
103718149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103718149
03036 Chromosome and associated proteins [BR:
pda03036
]
103718149
03400 DNA repair and recombination proteins [BR:
pda03400
]
103718149
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103718149
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103718149
Chromosome and associated proteins [BR:
pda03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
103718149
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103718149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
103718149
NCBI-ProteinID:
XP_008805052
UniProt:
A0A8B7CRZ7
LinkDB
All DBs
Position
1:7465108..7476540
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDYIYPEQYEYMVELKRALDARGHCLLEMPTGTGKTVALLSLITSYA
LARPSPPLKLLYCTRTVHEMEKTLAELRLLHSHLPPTHRSLALGLSSRKNLCVNPYVLSS
ASRDSVDSACRRLTASWVRAAAAEQPPGAVPTCSFFESYDRAASSGPDAVLLPPGVYTLG
DLRALGREKGWCPYFLARQMIRYANVVVYSYQYLLDPKVAGIISREMQRECVVVFDEAHN
IDNVCIEALSVSVRRQTLDGATRNLHRMAQEIDRFKATDASRLRAEYNRLVEGLAQRGNL
ALTDAWLSNPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLKGRLQTENVETERPVDFV
ASVSSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYMQGFSIII
EPFDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVIITSGTLSPIDLYPRLLNFNPVIS
RSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVAAVPDGIVCF
FVSYSYMDGIVNSWNEMGILQDVMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFS
VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILIARLEYLRNTFQIKEGDFLTFDALR
QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAR
EFLRRMAQPYDKAGTGGRKTLLSQEDLEKMGEDPMNMF
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccagatcgaggacgtgacggtgtacttcccctacgactacatctacccggag
cagtatgagtacatggtggagctgaagcgcgccctcgacgcccgcggccactgcctcctc
gagatgcccacgggcaccggcaagaccgtcgccctcctctccctgatcacctcctacgcc
ctcgctcgcccctcccctccccttaagcttctctactgcacccgcaccgtccacgagatg
gagaaaaccctcgccgagctccgcctcctccactcccatctcccccccacccatcgatcc
ctcgccctcggactctcctctcggaagaacctctgcgtcaacccgtacgtgctctcctcc
gcctcccgcgactccgtcgactccgcctgccgccgcctcaccgccagctgggtccgcgcc
gctgccgccgaacagcctcccggcgccgttcccacctgctccttcttcgagtcctacgac
cgtgccgcctcctccggccccgacgccgtcctcctcccacccggcgtctacaccctcggc
gacctccgcgccctcggccgcgaaaaggggtggtgcccctatttcctcgcgaggcagatg
atccggtatgccaatgtggtggtgtacagctaccagtacctgctcgaccctaaggtcgcc
gggatcatctcccgggagatgcagcgggagtgtgtcgtcgtgttcgatgaggcgcacaac
atagataatgtctgcattgaggcgctcagcgtcagcgttcgccgccagaccctcgacggg
gccacccgcaacctccaccgcatggcccaggagatcgataggttcaaagccacagatgct
agcagactgcgtgcagaatacaaccggcttgtagagggtttggcacaaagaggaaatctt
gccttaacggatgcatggctttcaaatcctgccttgcctgatgacattttgaaggaggct
gtgcctggaaatatccggagggctgagcatttcctgtctgtcttacgaagactggtgcaa
tatctgaaagggcgcctgcaaactgagaatgttgagacagaaagacctgttgattttgtt
gcttcagtcagttcacaagctggaatagatcagaaaatgcttcggttctgctatgaccgc
ttgcactctctcatgcttacgcttgaaataactgacacagatgaattcttacacattcaa
acaatctgcgactttgcaacactagttggaacatacatgcaaggtttttctataatcatc
gaaccctttgatgagagaatgcctcatattccagaccctgtgttgcagcttagctgtcat
gatgcctcacttgccataaagcctgttttcgatcgcttccagtcggttattataacttct
ggaactctaagccctattgatctttatcctcgtcttttgaattttaatccagtcataagt
cggagtttcacgatgtcgttgacaagggattgcatctgtcccatggttctgactcgggga
agcgatcagctacctgtgagtactaagtttgatatgcgtagtgatcctggtgttgtgagg
aactatggacggctcttgctggaaatggttgctgctgtcccagatggcattgtctgcttc
ttcgtcagttactcctatatggatggtattgtcaacagttggaacgaaatgggaatttta
caggatgtgatgcagcacaagctagttttcattgaaactcaggatgtagtagagacaacc
ttggctcttgataattatcgtagggcttgtgattgcgggagaggtgctgtcttcttttct
gttgccaggggaaaagtggctgaaggtatagattttgatcgacattatggcagactagtg
attatgtttggtgttcctttccagtacactcttagcaggatattgattgccaggttagag
tacttacgtaacactttccagataaaggagggtgattttttgacatttgatgcgttgagg
caagctgcgcaatgtgttggccgagtaattcgctctaaggcagattatgggatgatgata
tttgctgacaaaagatatagtcgccatgacaaacgctctaaattgcctgggtggatattg
tcacacttgcatgatgcacacctcaaccttagcacagacatggctttgcatatagcacgt
gagttccttcgaaggatggcccaaccatatgataaggcaggtactggtggcagaaagaca
ctcttatcgcaggaagacttggagaaaatgggtgaggatcctatgaatatgttttga
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