Phoenix dactylifera (date palm): 103718607
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Entry
103718607 CDS
T03274
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103718607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103718607
Spliceosome [BR:
pda03041
]
Complex A
U1 snRNP components
U1 related factors
103718607
Complex B
103718607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
WW_2
Motif
Other DBs
NCBI-GeneID:
103718607
NCBI-ProteinID:
XP_008805730
UniProt:
A0A8B7CT19
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All DBs
Position
5:complement(9992822..10026050)
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AA seq
1053 aa
AA seq
DB search
MASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQ
GVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQ
QNPQMPHNHLPNFGGVGMPLSSSYTFTTSYGQPQHTFNTPSQYQPASQMHAPVMPAVGQP
WSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQVHTSDDGKRYYYN
KKTRQSSWEKPFELMTPVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEELKLARE
QALRAAAAQPCTETGAASAVPAAPVVSSGEIPPATASVTPEATYAVVSSPVSVSANAIVP
PGVMASVSPSVAVVPSAGIPSSSSLGILNTVGASNPQTPVTPLLAPVPANTVVPTVAIEA
ALSNAKSNHDNSSLVNIASLPDGASAQDLEEAKKGMPVTGRSNAASLEEKTIDEEPFVYA
NKQEAKNAFKTLLESANVESDMTWEQAMRVIISDKRYGALKTLGERKQAFHEYLGQRKKQ
EAEERRIKQKKAREDFTRMLEECTELTSSTRWSKAVTMFENDERFNAVERARDREDLFES
YLLDLLKKERAKAAEEHKQNIMDYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKID
RLEIFQEYIHNLEKEEEEQRKKQKEQLRRQERKNRDEFRKLMEGHVAAGILTAKTHWRDY
CMQVKDLPPYKAVASNTSGSTPKDLFEDVAEELDKQYHEDKVQIKEAIKIQKIALASSWM
FEDLKVAISADDSLKGISEINMKLVFDELLERLREKEEKEAKKHQRLADNFSDLLYSIKE
ITASSGWEDCKSLFEDTQEYRSIGDENFVRGIFEEHVARLREKLKEKERKREEEKAKKEK
EREEKEKRKEKERKEKEERKEKEREREKDKGKDRSRKDEAGSENVDMMDSYGSKDRKREK
DKERKQRKHHHSMADDVSSEKDEKEESKKSRRYSGDRKKSRKHSYSSDSDSDNRHKRHKK
DRDGSHRNNGYEELEDGELGEDGEIFKNHVPGH
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaattcacagttttctggggtacagccccttaggcctgcagtggtcaggtcc
gcagttccacctcaaaattttggtccaccaatgcctatgcagtttggacatgtggttcca
gctcaacaaacacatcagttcatcccagcagcctctcagcaattccgacctgttgggcaa
ggtgttcatggtacaaatattggaatgccttctgatcaaactcaaatgccccatttttct
caacctgcacaccatttacctccaagatcaggcccagcagcaccaccatcttcacaagca
gttccaatgccatatgttcagccaaacaggcctatgacatctgggacactgcagccccag
caaaatcctcagatgccacacaatcatctgcctaatttcggtggcgtaggaatgcctctt
tcttcatcttatacatttacgacgtcttatggccagccacaacatacattcaacacccca
tcccaatatcaaccagcatctcagatgcatgcacctgttatgcctgcagtcggacaacct
tggtctacacacgggactcagaatgtacctcttgttacacatttagtgcaggctgcagca
caatcttcagctgcggcaggcacagttcctacaacaaatgcacaacctagctcagctgaa
caggcctcttctgattggcaagtgcacacatctgatgatggaaaaagatattattacaat
aagaagaccagacagtctagctgggagaagccctttgagttgatgacacctgttgagagg
gccgatgcttcgactgattggaaggaattcagcactccagatggacgaacatactattat
aacaaggtcacaaaggtatccaaatggataattcctgaggagctcaagctagctcgtgaa
caagcattaagggctgcagctgcgcagccatgtacagaaactggtgcagcttctgctgtc
ccagctgctccagttgtttcgtctggggagatccctcctgccacagcttctgtgactcct
gaagcaacatatgcagtagtatcaagcccagtttcagtgtcagccaatgctattgtacct
ccaggtgtgatggcttcagtatcgccatctgttgctgttgtaccatctgctggaatccct
tctagttcctctttgggaattctaaacacagttggcgcatcaaatcctcagacacctgta
actccattactggcacctgttcctgcaaatacagtggttcctactgttgcaatagaagct
gcattatctaatgcaaagagtaatcatgacaattcctctcttgtaaatattgcaagtttg
cctgatggagcttctgctcaggatttggaggaagctaagaagggtatgccggttactgga
agaagcaatgccgcttcattggaggagaaaacaattgatgaagaaccttttgtttatgct
aataagcaggaggcaaaaaatgcattcaaaaccctactggaatctgcaaatgttgaatct
gatatgacttgggagcaggcaatgagagttattattagtgacaagagatatggtgcgtta
aagacacttggtgagaggaaacaagcatttcatgagtacttggggcaaaggaaaaaacag
gaagctgaggaacggcgcattaaacagaagaaagcacgagaagacttcacccgaatgttg
gaagaatgtacagaacttacttcgtcaacccggtggagtaaagctgtcaccatgtttgag
aatgatgaacgatttaatgctgttgagcgggcaagagatcgtgaggatctattcgaaagc
tatttgctggatctcctgaagaaggaaagagcaaaggctgctgaggagcataagcaaaac
ataatggactatagagcttttcttgaatcatgtgacttcattaaggcaaacagtcaatgg
aggaaagttcaagaccggttggaggatgatgaaagatgttctcgacttgaaaaaattgat
cgtttggagatcttccaggagtatatacataatttggagaaggaagaggaggagcagcga
aagaaacagaaggagcaattaagacggcaggaacgcaaaaaccgtgatgagtttcgcaag
ttaatggaaggacatgttgctgctggaattcttacagctaaaactcactggcgtgattac
tgtatgcaggtgaaggatttgccaccatacaaagcagtagcatcaaacacatcgggttca
acgccaaaagatctgtttgaggatgttgcagaggaacttgacaagcagtaccatgaagac
aaggtccagatcaaagaagcaatcaagatccaaaagattgctttggcatcttcatggatg
tttgaagacttaaaggttgccatttcggctgatgatagcctaaaaggaatatctgagata
aacatgaagcttgtttttgatgagttactggaaaggcttagggagaaggaggagaaagag
gctaaaaagcaccaacgtcttgcagataatttctctgacttgctttactcaattaaggaa
ataactgcttcatcaggatgggaggactgcaaatcactgtttgaagacactcaagaatac
aggtccattggtgatgagaattttgtgagagggatttttgaagaacatgttgcccgcttg
cgagaaaagttgaaagagaaggagcgtaagagagaagaggaaaaggcaaagaaagagaaa
gaaagagaggaaaaagagaagaggaaggagaaagaaaggaaagaaaaggaagaaagaaag
gaaaaagagagagagcgtgaaaaagacaagggaaaggatcggtctagaaaagatgaagca
gggagtgaaaatgttgatatgatggacagctatggctcgaaggatagaaaaagggaaaag
gataaggaaagaaaacagcgaaaacatcaccacagcatggctgatgatgtaagctctgaa
aaagacgagaaagaggagtctaagaagtcccgcaggtatagtggtgaccgcaagaaatca
cggaagcactcttactctagtgattcagatagtgataatcggcacaagaggcataagaaa
gatcgagatggctcccatagaaataatggttacgaggagcttgaggatggggaacttgga
gaggatggggaaatctttaagaatcatgtaccaggtcactga
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