Phoenix dactylifera (date palm): 103718838
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Entry
103718838 CDS
T03274
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103718838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103718838
03016 Transfer RNA biogenesis [BR:
pda03016
]
103718838
Enzymes [BR:
pda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
103718838
Messenger RNA biogenesis [BR:
pda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
103718838
Transfer RNA biogenesis [BR:
pda03016
]
Prokaryotic type
tRNA degradation factors
103718838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
103718838
NCBI-ProteinID:
XP_017701138
UniProt:
A0A8B7MW83
LinkDB
All DBs
Position
11:complement(27145062..27216413)
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AA seq
976 aa
AA seq
DB search
MLANASPPTLLHVHGGGPAPSLLLRTRTRDSNRSLFFAAASSSSSSCHSSRGRGGLPLFF
HSLPRFPFQSLRRLRATQRRLPPPRSSISAEQSEERGDEGTATSAPHKYSVKIPFGNRHI
LVETGHIGRQASASVTVTDGETIVYCSVCLSDVPSEPADFFPLAVNYQERLSAAGRTSGG
FFKREGRAKDHEVLICRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDCLAVTAAGI
AVALSEVPNTKIVAGVRIGLVGDQFIVNPTTKEMEESELDLILAGTDNAILMIEGYCNFL
TEERLLKAVEIGQAAVRDICNEVEALVKKCGKLKMIEAIKLPPLELYRHVEDISGDELVK
ALQIKNKIPRRRALSAIEDKVLTILTEKGYIVKGEAPGDAEGVPVAYEDEDGDEVVVVDG
EVDEGDVHIKPNSRKPIPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRNPLEIRPI
NSQCGVLPRAHGSALFTRGETQSLAVVTLGDKQMAQRIDNLVDTEELKRFYLQYSFPPSC
VGEVGRMGAPSRREIGHGMLAERALEPILPSEEDFPYTIRVESTITESNGSSSMASVCGG
CLALLDAGVPVKCSVAGIAMGMVLDTKGFGGDGTPLILSDISGSEDASGDMDLKVAGDEN
GITAFQMDIKVGGIALPVMEQALLQARDGRKRVLYEMLKCSRPPCKKLSKYAPLIHVMKV
KPEKVNLIIGSGGKKVKSIIEETGIEAIDAQDDGMVKITAKDLSSLEKSKAIITNLTMVP
TVGDIYRSCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVFKVGDRIDVKLIE
INEKGQLRLSHRALLPDVDPEKASTKQQNIGTMKENIPPQHQPAKVTAKKPLRKGEGQQI
VQSSENSKVVKVLPQKVTAPSADTSEQESLTDKNQEKAGKRLANPVKGGPYINKERQKKV
LDETVTGVSASKNGIS
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgctagcgaacgcctcacctcctaccctcctccatgtccatggcggcggacctgctcct
tctctgcttctgcgaaccagaacaagagacagcaacagaagcctcttcttcgccgccgcg
tcctcctcctcctcttcgtgccattcgtctcgaggacgaggcgggttgcctctcttcttc
cactcccttcctcgtttcccgtttcaatcgcttcggaggctgagggcaacgcagcgcagg
ctgcctcctcctcgcagtagcatctccgcagagcagtcggaagagaggggcgacgagggc
accgccacttccgccccgcacaagtactccgttaagatccccttcggcaaccgccatatc
ttggtggagacaggccacattgggaggcaagctagtgcttctgtgacagtaaccgatggg
gaaaccattgtctattgttcggtctgtctgtctgatgttccgagtgagcctgctgatttc
ttcccactcgcagtaaattatcaggagcgtctttcagctgcaggccgcacaagtggtggg
tttttcaaacgggaagggagggcgaaagaccatgaggttcttatttgcagattgatagat
agacccttgcgtccaacaatgccgaagggtttctactatgaaacacaaatactgtcatgg
gtttttagctatgacggtattcattccccagattgcttggctgtcacagcagcaggcata
gcagtagctctctcggaagtgccaaataccaaaatagttgctggagttagaattggcctc
gttggtgatcagttcattgtcaatccaactaccaaagagatggaggagtcagagttggac
ttgatactggcagggactgataatgctatattgatgatagagggctactgtaactttctc
acagaggagaggttgctaaaagctgtggaaattgggcaggctgcagtaagagatatatgc
aatgaggtggaggctttagtcaagaagtgtggaaaactgaaaatgattgaagctatcaag
ttacctcctctcgagctctataggcatgttgaagatatttctggtgatgaattggtaaag
gcactccaaataaaaaataaaataccaaggagaagggctctttctgcaatagaagacaaa
gttttaacaatacttactgaaaaaggttatattgtcaaaggtgaagctccaggagatgct
gaaggtgtaccagttgcttatgaggatgaggatggggatgaggtagtagttgttgatgga
gaggtggatgaaggtgatgttcatataaagccgaattcacggaaacccattcccttgtta
ttttctgaagtggatgtgaagttggtcttcaaggaagtgacgtccaaatttttgcgcaag
cgtattgtggagggtggaaaacgaagcgatggacgaaaccctctagagattcgtccaatt
aactcacaatgtggagtacttcctagagcacatgggagtgcacttttcacacgcggtgaa
acacagtcacttgctgtggttactcttggagacaaacaaatggcacaaaggatagacaac
cttgtggacacagaggagttaaaaagattctatcttcagtactcatttccaccatcatgt
gttggtgaagtcgggcgcatgggagcacccagtaggagggagattggtcatggaatgcta
gctgaaagagcactggagcccattttgccttcagaagaggattttccttacactattcgt
gttgagagtaccattactgaaagtaatggctcttcgagcatggcatctgtatgtggaggt
tgcttagcacttctagatgctggagttcctgtcaagtgctctgttgctgggatagcaatg
ggtatggtcttggacacgaagggatttgggggagatggaactcctctcattctctctgat
atcagtggatctgaagatgcttccggagatatggatcttaaggttgctggtgatgagaat
ggtatcactgccttccagatggacattaaggttggaggaattgctcttccagtgatggag
caagcacttcttcaagcaagagatggtcgaaaacgtgttctatatgaaatgttgaagtgt
tcacgaccaccatgtaagaaactctccaaatatgctccattgattcatgttatgaaggtc
aaacctgagaaagtgaatcttattattggttctggtggaaagaaggtgaaaagcatcata
gaggagactgggattgaagctattgatgcccaagatgatggcatggttaaaattacagcg
aaggacttgtcaagcttagagaagtcaaaagcgatcatcaccaatcttacaatggttcca
acagtgggtgatatatacaggagctgtgagatcaaatcaatagcaccttatggagttttt
gttgagattgcaccaggacgtgagggactatgtcatattagcgagctgagttcaaactgg
ttggcaaaagctgaagatgtatttaaagttggagaccgtattgatgtcaaacttattgag
ataaatgagaagggtcaacttcgcttaagccatcgagctctgcttcctgatgtggacccc
gagaaagccagcaccaagcaacaaaacattggcaccatgaaagaaaatatacctccccaa
catcaacctgctaaagttacggcaaaaaagcctttgaggaaaggtgaaggtcagcagatt
gtacagtcatctgagaattctaaggtagttaaggttctccctcaaaaggtaacagctcca
tcagcagatacctcggagcaagaaagtttgactgacaaaaaccaggaaaaggctgggaag
cgattagcaaaccctgttaaaggtgggccatatatcaacaaagaaaggcagaagaaggtc
cttgacgaaacagttactggggtgtctgcttctaaaaatggaataagttaa
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