Entry |
|
Name |
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
|
KO |
|
Organism |
pda Phoenix dactylifera (date palm)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:pda00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103719076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:pda03041]
103719076
Enzymes [BR:pda01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103719076
Spliceosome [BR:pda03041]
Complex C
Other components
Step II factors
103719076
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
11:complement(28312557..28378394)
|
AA seq |
710 aa
MAVLPILEFEEKIVETVDENPVVVIIGETGSGKSTQLSQILHRRGYTRSGMIAITQPRRV
AAVSVARRVALELGVQLGEEVGYAIRFEDRTSYRTCIKLLCYGTLRYLTDGCLLRESLSN
PELEQYSVIILDEAHERSLNTDILLGLMKRLVKTRSSNLKVLITSATLDGVKVSRFFSGC
SILNVPGTLFPVEKLYSTERTTNYVKSSLRTALDIHVREPPGDVLIFMTGQDDIDKMVSK
LEERIQNLEEGSCMDAIVLPLHGSLPPEMQVRVFSPAPPNCRRFIVATNIAETSLTVDGV
VYVIDCGYVKQRQYNPSTGMYSLDIVQISRVQANQRAGRAGRTRPGKCYRLYPASVYQEE
FLDATVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRESLEDALRQLYLIDAIDE
NGQITHIGRTMAELPLEPSLSRTLIEANELGCLSQALTVAAILSAEITIRPTRSKAKERK
RKQPFSNLPDGSGWGDHIQLLQIYESWDQADYDLNWCMDNDLQIRSMKFCKDVRKQLSQI
IQKIAKGPVDVQSSLKYKKGEKDYQKLRRALCRGYGNQLAERMLHHNGYHTLGYRSQLVQ
VHPSSVLEADEDGQLPDYVVYHELINTSRPFMRNVCAVEMSWVLPMLKKLEKMDTNRLSG
GAGVSKVCEPMKEKLMNSSTKEANDSKKPDSVDSKIRAARERYLARKAKK |
NT seq |
2133 nt +upstreamnt +downstreamnt
atggcggtgctcccgattcttgaattcgaagagaagatcgtggagaccgtggacgagaac
ccggtggtggtgatcatcggggagacgggctcggggaagagcactcaactctcccagatc
ttgcaccggagaggatacacccgttctgggatgatcgccatcacccagcctcgcagggtt
gccgcggtctctgtcgctaggagggttgcgcttgaacttggtgttcaacttggtgaagaa
gttggttatgcaatccgtttcgaagatcgaacttcttatagaacttgcattaaacttttg
tgctatggaacactcaggtacttgactgacggttgtctacttcgcgagagtctatcaaat
ccggagttagagcagtactcagtcattattttggatgaagcccatgaacgtagtttgaat
actgacatattgctggggttgatgaaacgattagtcaagacacgttcttcaaatttaaaa
gttcttatcacctcggcaaccttggatggtgtaaaggtatcaagatttttttcaggttgt
tctatattgaatgtcccaggaacgttgtttcctgtggagaagttgtacagcaccgagcgt
accacaaactatgtcaaatcttctctcagaactgctcttgatatacacgtccgtgaaccg
cctggggatgtcttaatattcatgacaggacaggatgacattgacaaaatggtgtcaaaa
ttggaggaaagaattcaaaaccttgaggaaggttcttgtatggatgctattgtcctccca
cttcatggttcattgccacccgaaatgcaggtacgtgtattcagtcctgcaccaccaaat
tgtaggcgctttattgttgcgacgaatatagctgaaacttctttgactgttgatggtgtt
gtatatgttatcgattgtggttatgtgaaacaacgtcagtacaacccatcaactggaatg
tattctcttgatattgtgcaaattagcagagtacaagccaatcagcgtgctggacgagct
ggaagaactcgtcctggcaagtgctatcgattataccctgcctctgtctaccaggaagag
tttcttgatgcaacagtgccggaaatccagcgatcatctcttgctggaagtgttctctac
ctgaaatccctagatcttcctgacattgatattttgaagtttgattttcttgatccacca
tcacgtgaatcgctagaagatgctttaaggcagttatacctcattgatgcaattgatgaa
aatggacagataactcatattggacgaactatggctgagcttccactggagccttcactt
tcaaggactttgattgaggcaaatgagctgggatgtttgtctcaggctttgaccgttgca
gcaattctatcagcagaaattacaattcgtcctactagaagtaaggccaaggagaggaag
aggaagcagccattctcaaaccttcctgatggttctggctggggtgatcacattcagttg
cttcaaatatatgagagctgggatcaagctgactatgatctgaattggtgtatggataat
gacttgcagatacgaagcatgaagttctgcaaggatgttaggaagcaattatctcagata
atacagaagattgccaaagggccagtggatgtacaatcaagcttaaaatataaaaagggc
gaaaaagactaccaaaaattgaggagagctttatgcaggggctatgggaatcagctggct
gagcgaatgttgcatcacaatggctaccatacacttggttacaggtcacaacttgtgcag
gtacatccatcctcagttctagaagctgatgaagatgggcagttgccagactatgtcgtg
taccatgaactcataaatacctcgcgccctttcatgagaaatgtatgtgcagttgaaatg
tcatgggttctgcccatgttaaagaaactagagaaaatggacaccaacagactaagtggt
ggtgctggcgtttcaaaggtgtgtgaacccatgaaggaaaaactaatgaactcatccacg
aaagaggcaaatgatagcaaaaaacctgactctgtggatagtaaaattcgggcagctcgt
gagcgatatcttgctcgaaaagcaaagaaatag |