KEGG   Phoenix dactylifera (date palm): 103719076
Entry
103719076         CDS       T03274                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103719076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pda03041]
    103719076
Enzymes [BR:pda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103719076
Spliceosome [BR:pda03041]
 Complex C
  Other components
   Step II factors
    103719076
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C AAA_22 DEAD AAA_19 cobW ABC_tran AAA_16 nSTAND3 NPHP3_N AAA_30 AAA_23 AAA_29 SLFN-g3_helicase Helicase_RecD ATPase_2 FtsK_SpoIIIE DAP3 Sigma54_activat
Other DBs
NCBI-GeneID: 103719076
NCBI-ProteinID: XP_008806369
UniProt: A0A8B7CTU6
LinkDB
Position
11:complement(28312557..28378394)
AA seq 710 aa
MAVLPILEFEEKIVETVDENPVVVIIGETGSGKSTQLSQILHRRGYTRSGMIAITQPRRV
AAVSVARRVALELGVQLGEEVGYAIRFEDRTSYRTCIKLLCYGTLRYLTDGCLLRESLSN
PELEQYSVIILDEAHERSLNTDILLGLMKRLVKTRSSNLKVLITSATLDGVKVSRFFSGC
SILNVPGTLFPVEKLYSTERTTNYVKSSLRTALDIHVREPPGDVLIFMTGQDDIDKMVSK
LEERIQNLEEGSCMDAIVLPLHGSLPPEMQVRVFSPAPPNCRRFIVATNIAETSLTVDGV
VYVIDCGYVKQRQYNPSTGMYSLDIVQISRVQANQRAGRAGRTRPGKCYRLYPASVYQEE
FLDATVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRESLEDALRQLYLIDAIDE
NGQITHIGRTMAELPLEPSLSRTLIEANELGCLSQALTVAAILSAEITIRPTRSKAKERK
RKQPFSNLPDGSGWGDHIQLLQIYESWDQADYDLNWCMDNDLQIRSMKFCKDVRKQLSQI
IQKIAKGPVDVQSSLKYKKGEKDYQKLRRALCRGYGNQLAERMLHHNGYHTLGYRSQLVQ
VHPSSVLEADEDGQLPDYVVYHELINTSRPFMRNVCAVEMSWVLPMLKKLEKMDTNRLSG
GAGVSKVCEPMKEKLMNSSTKEANDSKKPDSVDSKIRAARERYLARKAKK
NT seq 2133 nt   +upstreamnt  +downstreamnt
atggcggtgctcccgattcttgaattcgaagagaagatcgtggagaccgtggacgagaac
ccggtggtggtgatcatcggggagacgggctcggggaagagcactcaactctcccagatc
ttgcaccggagaggatacacccgttctgggatgatcgccatcacccagcctcgcagggtt
gccgcggtctctgtcgctaggagggttgcgcttgaacttggtgttcaacttggtgaagaa
gttggttatgcaatccgtttcgaagatcgaacttcttatagaacttgcattaaacttttg
tgctatggaacactcaggtacttgactgacggttgtctacttcgcgagagtctatcaaat
ccggagttagagcagtactcagtcattattttggatgaagcccatgaacgtagtttgaat
actgacatattgctggggttgatgaaacgattagtcaagacacgttcttcaaatttaaaa
gttcttatcacctcggcaaccttggatggtgtaaaggtatcaagatttttttcaggttgt
tctatattgaatgtcccaggaacgttgtttcctgtggagaagttgtacagcaccgagcgt
accacaaactatgtcaaatcttctctcagaactgctcttgatatacacgtccgtgaaccg
cctggggatgtcttaatattcatgacaggacaggatgacattgacaaaatggtgtcaaaa
ttggaggaaagaattcaaaaccttgaggaaggttcttgtatggatgctattgtcctccca
cttcatggttcattgccacccgaaatgcaggtacgtgtattcagtcctgcaccaccaaat
tgtaggcgctttattgttgcgacgaatatagctgaaacttctttgactgttgatggtgtt
gtatatgttatcgattgtggttatgtgaaacaacgtcagtacaacccatcaactggaatg
tattctcttgatattgtgcaaattagcagagtacaagccaatcagcgtgctggacgagct
ggaagaactcgtcctggcaagtgctatcgattataccctgcctctgtctaccaggaagag
tttcttgatgcaacagtgccggaaatccagcgatcatctcttgctggaagtgttctctac
ctgaaatccctagatcttcctgacattgatattttgaagtttgattttcttgatccacca
tcacgtgaatcgctagaagatgctttaaggcagttatacctcattgatgcaattgatgaa
aatggacagataactcatattggacgaactatggctgagcttccactggagccttcactt
tcaaggactttgattgaggcaaatgagctgggatgtttgtctcaggctttgaccgttgca
gcaattctatcagcagaaattacaattcgtcctactagaagtaaggccaaggagaggaag
aggaagcagccattctcaaaccttcctgatggttctggctggggtgatcacattcagttg
cttcaaatatatgagagctgggatcaagctgactatgatctgaattggtgtatggataat
gacttgcagatacgaagcatgaagttctgcaaggatgttaggaagcaattatctcagata
atacagaagattgccaaagggccagtggatgtacaatcaagcttaaaatataaaaagggc
gaaaaagactaccaaaaattgaggagagctttatgcaggggctatgggaatcagctggct
gagcgaatgttgcatcacaatggctaccatacacttggttacaggtcacaacttgtgcag
gtacatccatcctcagttctagaagctgatgaagatgggcagttgccagactatgtcgtg
taccatgaactcataaatacctcgcgccctttcatgagaaatgtatgtgcagttgaaatg
tcatgggttctgcccatgttaaagaaactagagaaaatggacaccaacagactaagtggt
ggtgctggcgtttcaaaggtgtgtgaacccatgaaggaaaaactaatgaactcatccacg
aaagaggcaaatgatagcaaaaaacctgactctgtggatagtaaaattcgggcagctcgt
gagcgatatcttgctcgaaaagcaaagaaatag

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