Phoenix dactylifera (date palm): 103719228
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Entry
103719228 CDS
T03274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103719228
09122 Translation
03013 Nucleocytoplasmic transport
103719228
03015 mRNA surveillance pathway
103719228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103719228
03041 Spliceosome [BR:
pda03041
]
103719228
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103719228
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103719228
Spliceosome [BR:
pda03041
]
Complex C
Other components
EJC/TREX
103719228
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103719228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
103719228
NCBI-ProteinID:
XP_008806594
UniProt:
A0A8B7CUU7
LinkDB
All DBs
Position
11:complement(2185199..2193418)
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AA seq
428 aa
AA seq
DB search
MGEARENDAYEEELLDYEEDEEKAPDSVAAKANNESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIAKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaagggaaaacgatgcttacgaggaggagcttctcgactacgaagaggat
gaggagaaggcccccgacagcgttgcggccaaggctaataatgaatcagcgaagaaagga
tatgttggaattcacagttccggattcagagacttcctattgaagccagagcttcttcgg
gctatagtagattcagggtttgagcatccttctgaagtacaacatgagtgcatccctcaa
gctattttgggaatggatgtcatctgtcaagcaaagtctgggatggggaagactgctgtg
ttcgttctctccacacttcagcaaatcgagcctgttgcaggccaagttgctgcacttgtt
ttgtgccatacgagagagttagcttaccagatttgccatgagttcgagagattcagcaca
tacttgcctgatattaaagttgctgtgttctatggaggagttcatattgcaaaacataag
gatatactgaagaatgagtgtcctcacattgttgttgggacgccaggaagaatactggca
ctagctagggataaagatctttctttgaagaatgtgaggcattttattctcgatgaatgc
gacaagatgctcgagtcacttgacatgcggagagatgtgcaggagattttcaaaatgaca
cctcatgataagcaagtcatgatgttttcagcaacactcagcaaggagatacgtcctgtt
tgcaagagatttatgcaagatccgatggaaatatacgtggacgatgaggccaaacttacc
ctgcatggtttagtacagcactacatcaaactgagcgagttggaaaagaaccggaaattg
aatgatcttttggatgcgctggacttcaatcaggtggtgatctttgttaaaagtgtcaac
agagctgcagagctgaacaagttgctggtagagtgcaattttccatcaatctgcatccac
tctggaatgtcacaggaagagagattgacaaggtacaaaggcttcaaagaagggcacaag
aggattcttgtggctactgatttggttggcagagggattgatattgaacgagttaacatc
gtaataaattatgacatgccagattctgcagacacatacttgcacagggttggcagagcc
ggccgttttggaaccaagggacttgctattacatttgtctcctctgcctctgactcagat
gttcttaatcaggttcaagagaggtttgaggtggacataaaggagctgccagagcaaatt
gacacctcgacatacatgccatcctga
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