Phoenix dactylifera (date palm): 103719298
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Entry
103719298 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103719298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103719298
03012 Translation factors [BR:
pda03012
]
103719298
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103719298
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103719298
Translation factors [BR:
pda03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103719298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
HA2_C
DEAD
OB_NTP_bind
HA2_N
AAA_19
Ank_2
nSTAND3
ATPase
AAA_22
AAA_14
ResIII
Ank_5
NPHP3_N
PhoH
Rad17
T2SSE
AAA_25
Motif
Other DBs
NCBI-GeneID:
103719298
NCBI-ProteinID:
XP_008806702
UniProt:
A0A8B7CUZ8
LinkDB
All DBs
Position
16:complement(10645822..10675921)
Genome browser
AA seq
1207 aa
AA seq
DB search
MGRKGQKKGNGGEQQPVVVTEATRIQIGKILEEFRVSDAKVYTFEPGLSKHERAAIHEMC
RKIGMISKSSGYGERRCLSVYKNRKKQGAIKNEEETVTCLKFSEETKNVLRDLFTRFPPD
DGELREEALRSSSKKAGKRQWKQDSSFFKPSMHKSEIAKKVDQLTSKINGSAQLKKIMED
RAKLPIASFKDVITSTLETNQVVLISGATGCGKTTQVPQYILDHMWAKGEACKIVCTQPR
RISAISVAERIAYERGETIGENVGYKIRLESQGGKNSSIMFCTNGVLLRLLISRGANSSK
AEMGNKKLEDGIMGITHIIVDEIHERDRFSDFMLAILRDILPSYPHLRMVLMSATIDAER
FSQYFNGCPIIQVPGFTYPVKTFYLEDVLSILKSTDDNHLDRVAISGVEEGTSLTEDYKN
ALDESINLALSNDEFDPLLELISSEQTPKVYNYQHSLTGVSPLMVFAGKGRIGDVCMLLS
FGADCSLCAQDGSSALDWAQQENQLRVCEILKKHIEKDISKSAEEEELLGTYLASINPEH
VDTVLIERLLRKICTDSKEGAILVFLPGWDDINQIRERLLASPFFRDPLKFVILSLHSMI
PSAEQKKVFKCPPVGARKIILSTNIAETAVTIDDVVYVINSGRMKEKSYDPYNNVSTLQS
SWVSKASARQREGRAGRCQPGTCYHLYSRTRAASLPEYQVPEIKRMPIEELCLQVKLLDP
DCGIVDFLQRTLDPPVPETIRNAIIVLQDIGALTDDEKLTDLGEKLGSLPVHPSTSKMLL
FAILMNCLDPALTLACASDYREPFILPMAPDERKRAAAAKVELASLYGGYSDQLAIVAAF
DCWKRAKDRGQESQFCSKYFISSNTMNMLSNMRKQLQSELARNGFVPSGISNCSLNAQDP
GILRAVLMAGTYPMVGRLLPPRKNSGKRAIVETASGAKVRLHPHSLNFNLSFSKSTGSPL
IIYDEVTRGDGGMYIKNCSLAGPYPLLLLAMEMVVAPADDDDESDEDEASSGEEDEMEMN
TSSGKSGEEIMSSPDNTVSVVVDRWLRFESTALDVAQIYCLRERLSTAILFKVKYPQEVL
PPALGASMYTIACILSYDGLPSIVPRESMDPQKLKADATDMNPGRRAIGYISPGKFLISL
ISDKVGNKSHFHKNRAAVHGSAISTGSLPHAPVDRFQQQGPALNGRGSGGAAPRVRSSKR
QRKSGSQ
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaggggcagaagaaggggaatggaggggagcagcagccggtcgtcgtcacc
gaggccacccgcattcaaataggcaaaatcctcgaggagttccgagtctcagatgcgaaa
gtttacacatttgaacctggtttgtcgaagcatgaacgagctgcaattcatgaaatgtgc
agaaaaattggtatgatatcaaaaagttctgggtatggagaacgtagatgtctttctgta
tacaaaaacagaaagaaacagggagctattaagaatgaagaagagactgttacttgcttg
aaattttcagaagaaacaaaaaatgtcttacgggacctatttacacgttttcctcctgat
gatggggagttgagggaagaagcactcaggagttctagcaaaaaggccggtaaacggcaa
tggaagcaagatagtagctttttcaaaccatcaatgcacaagtctgaaattgcaaagaag
gtggatcagcttacatctaagataaatgggtctgcacagctgaaaaagatcatggaagac
agagctaaacttccaattgcatccttcaaggatgtcatcacatcaacattggaaactaac
caggtggtgctgatttctggtgcgactggttgcggtaaaactactcaggtccctcaatac
atcttggatcatatgtgggcaaaaggtgaggcatgtaaaattgtgtgtacacaacccagg
cgcatatcagccatttcagttgctgagagaattgcttatgaaagaggggaaactattgga
gaaaatgtaggatataagatacgtctggagtctcaaggcggaaagaactcatccataatg
ttctgcactaatggagttcttttgagattattgatcagcagaggtgcaaattcatccaag
gcagaaatgggaaacaagaagctggaggatggtatcatgggaataacccacattattgtg
gatgaaattcatgaaagggacaggttttctgattttatgctggcaattctcagagacatc
ctgccttcatatcctcatcttcgaatggtactcatgagtgctactattgatgccgagcga
ttttcgcagtacttcaatggatgccccattattcaggtccccggctttacgtatccagtc
aaaactttctatttggaggatgtcctttctatcttaaaatctacagatgataatcatctg
gatcgtgtggccataagtggtgtggaggaaggtacttcattgacagaagactacaaaaat
gccctagatgaatcaatcaatctagctttgtcaaatgatgaatttgacccactgctagaa
ctgatttcttctgagcaaacaccaaaagtctacaactaccagcattcgttgactggtgta
tcaccattgatggtgtttgctggaaagggcagaataggagatgtatgcatgctcctgtca
tttggtgctgactgttctttatgtgcccaagatggaagctccgctctggattgggctcag
caggagaatcagctccgggtctgtgaaattttaaaaaaacacatagagaaagatatatca
aagtcagcagaggaggaggagctacttggcacatacctagcaagcattaacccggagcac
gttgacactgtactgatagagaggttattaagaaaaatatgtactgattccaaggaggga
gctatcctagtgtttcttccgggatgggatgacataaatcaaatcagagagagattgctt
gcttctccattttttcgagatccattgaagtttgtgattctctctctccattctatgatt
ccatctgcagagcagaagaaagttttcaaatgtccacctgttggtgcccgtaaaattatt
ctctcaacaaacattgcagagactgctgttaccattgatgatgttgtgtatgtgataaac
agtggtcggatgaaagagaaaagttatgatccttataacaatgtatctactctgcagtct
tcttgggtttcaaaagctagtgcaaggcagcgtgagggacgtgctggtcgttgtcagcct
ggaacttgttaccatctgtactcgagaacacgtgcagcatctctaccagagtaccaagtt
cctgaaataaaacggatgccaattgaggaactctgtttgcaggtcaagttgcttgatcca
gattgtggaatagtagactttttgcagagaactttggaccctccagttccagaaactatc
cgtaatgcaatcattgttcttcaagacattggtgccttaacagatgatgaaaagcttaca
gatcttggggaaaagcttggttcccttcctgttcatccatcaactagcaagatgctatta
tttgctatcttgatgaattgcctagatcctgcattaacactagcatgtgcatcagattat
cgagaaccatttattctgccaatggctcccgatgagaggaagagagctgcagcagccaaa
gttgaactggcttccttgtatggtggctatagtgatcagcttgcaattgttgcagcattt
gattgttggaagcgtgcaaaagacaggggtcaagaatcacagttttgctccaagtatttt
atctcttcaaacaccatgaacatgttgtctaacatgcggaagcagcttcagagcgaattg
gcaagaaatggttttgttccttcaggtatatctaactgtagtttaaatgcccaagatcca
ggcatcctgcgggcggtcctcatggctggtacttatccaatggtgggaagattgctcccc
cctcgcaaaaatagtggtaaaagagctattgtggagacggctagtggtgccaaagttcgc
ttgcatccacattccttgaactttaatttatcatttagcaaatcaactggtagcccactt
ataatttatgatgaggttacccgtggagatggggggatgtacataaaaaactgttctctg
gctgggccatatccattgttgttacttgcaatggagatggttgttgctcctgcagatgac
gatgatgaaagtgatgaagatgaagcttccagtggtgaggaagatgagatggaaatgaac
acatcttctggaaagagtggagaggagattatgtcttctcctgataacactgtatcagtc
gtcgttgaccgatggttaagatttgaatcaacagcactcgatgttgctcagatttactgc
ttacgagaacggctatctactgctatcttattcaaagtcaagtatccacaggaagtccta
cctcctgcacttggggcatccatgtataccattgcttgtattctttcatatgatggattg
ccgagtatagtgcctcgtgaatcaatggatccccaaaaattgaaggcagatgccactgac
atgaatccgggaaggagagcaattggatatatttcacctggcaaattccttatatcttta
atatcagataaagtcggaaataaatcgcatttccacaagaacagggcagcagtgcatggt
agtgccatctcaacaggctccctgccacatgccccagttgacaggttccaacaacaaggg
cctgccttaaatggacgaggttccggtggtgctgcaccaagggtcaggtcttctaaacgg
cagcgcaagagtgggtcccaatga
DBGET
integrated database retrieval system
