Phoenix dactylifera (date palm): 103719549
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Entry
103719549 CDS
T03274
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin-like
KO
K23288
syndetin
Organism
pda
Phoenix dactylifera (date palm)
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pda04131
]
103719549
Membrane trafficking [BR:
pda04131
]
Protein recycling
Others
EARP complex
103719549
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
103719549
NCBI-ProteinID:
XP_038982738
UniProt:
A0A8B9AFJ1
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Position
5:complement(12189796..12283060)
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AA seq
1108 aa
AA seq
DB search
MRQDPSGIPSFLDGGRPIQEFDNPGPLLFLPLLFLQGGGMDLSRIGEKLLSSVRSARSLG
LLPPASDRPEVPARAAAAAAAARALAGLPPHQRITLPSNSEELVSIYGIRSQGQVIEELE
EGFYHEDFDPVRHVLENIPSEENDVTYFDQKSTLRLAQLDKIAEQLSRHVMEHHEEMVKG
MQLVMELEQDLKVANVICMNGRRHIASSMQEVSRDLVVNSHSKKKQALLDMLPILTELRH
ALDMQMELEALVENGNYFVAFQLLPEYLQVLENYSELSAIQEMGCGVEAWLARTIQKLDS
HLLGVCQMFKEESYITAVDAYALMGDVAGLAEKIQSFYMQEILSGTHSVLKDLVQEEIGN
TTQRSRLTYSDLCVQIPESKFRKCLLKTLDTLFKLMCXYYSIMSFRPEEKVIDSESQISS
NSSVQNGFKSESLPKKEDFDAANSMSGIGVTENLRSTTLHSCTSSTEINDGETATSSSGR
PFYLLRKDATEIVAHTLEKGRKNLWQLMTSRLSVLLSCSAICSTSNYQFLRNYEDLNVFI
LAGEAFCGVKAVEFRQKLKIVCENYVTAFHLQNVHALKMILEKESWVKMPAEALQVISLA
GLIGDASPLIVPFVSNTSTVSALHSKKSYDPAFSGKQNSGFVYWLKLENPFSSKLASGSK
ESPKAHLLFSESRASSLTDGHAVDLLHDNSISAKNHYGNHVNGSNSVLEDENEDLLADFI
DEDSQLPSRISKHTLARKHSANWNDEEVSAQTGSSLCLLRLMDKYARLMQKLEIVNVEFF
KGICQLFGIFYHHIFETFGQRDTNQSGKFLPDTLSSRLKTALSKIMQDCDVWIRPQNASC
SPSSPVSLNTTFTHMDVMPTIPPSTVFGHAPSTLFGLKERCAGAETISLVARVLYRSKNH
LQSMLLQHNATIVEDFFGNLVDSVPDLSEHIHRTTASMLLHINGYADKITNAKWEVKDLG
LEHNGYVDLLLGEFKHYKTRLAHGGISKEVQDLLLEYGLENVAEVLIEGLSRVKRCTDEG
RVLMSLDLQVLINGLQHFVSINVKPKLQVVETFIKAYYLPETEYVHWARSHPEYSKSQIV
GLINLVATMKSWKRKTRLEVLERIEASI
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcggcaggatccgtcgggaatcccctcgttcctcgacggtggccgtccgatccaggag
ttcgacaacccggggcccttgctgttccttcccttgcttttcctccagggaggagggatg
gatctgtcccgaatcggcgagaagctcctcagctccgtgcgctccgcgagatctctcggg
cttcttcccccggcgtccgatcgtccggaggttccagctcgagcagcagcagctgctgct
gctgctcgtgctctagcaggacttcccccacatcaaaggattacccttccatcaaattct
gaagaattggtttcaatctatggcatcagatcccaaggtcaggtcatagaagagcttgag
gaaggcttctatcatgaggattttgatccagtgaggcatgttctggaaaatattccatct
gaagaaaatgatgttacctattttgatcagaagtccactcttagattggcccagcttgat
aagatagcagaacagttatcacgtcatgttatggagcatcatgaagagatggtgaagggg
atgcaattggtgatggagttggagcaagatttgaaagttgcaaatgtcatctgcatgaat
gggagaagacatatagcctcgtcaatgcaagaggtctcaagggatcttgttgtgaactcg
cattcgaaaaagaaacaagctttattggacatgcttccaattcttacagaacttcgtcat
gcattagacatgcaaatggaacttgaagcactagttgagaatggaaattactttgtggca
tttcagttattaccagagtacttgcaagttttggagaactattcagaactttctgctatt
caagaaatgggatgtggtgttgaggcttggttagcaaggacaattcagaagctggattca
cacttactaggagtttgccagatgttcaaggaggaaagctacataactgcagttgatgca
tatgcgttaatgggggatgttgctgggcttgctgaaaaaatacagagtttctatatgcaa
gaaattctctctggaacacattctgtactgaaagatttggtgcaagaggaaattggaaat
acaacgcagagaagtagacttacctacagtgatctctgtgttcaaatacctgaatccaaa
tttcggaagtgtttgttaaaaactttggataccctatttaagttgatgtgttgatattat
tctatcatgagctttcgaccagaagaaaaggtaattgattcagagtcacagatatcaagc
aattcaagtgtacagaatggatttaaatctgagtctctgccaaaaaaggaagactttgat
gcagcaaatagtatgtctggtattggtgtaactgaaaatctgagatcaacaactttacat
tcttgtacatcatctactgagataaatgatggtgaaactgccacatcaagcagtggtcgt
cccttttatctgctgagaaaagatgccacagagattgttgctcacacactagagaaaggg
cgaaaaaatctatggcaacttatgacaagtcgtttatctgtcttgctatcttgttcagcc
atctgctcaactagcaattaccaattcctgaggaactatgaagatcttaatgtatttatt
ttggctggtgaagcattctgtggagtgaaagctgtcgaattcaggcagaaactgaaaatt
gtttgtgaaaattatgtgacagcctttcaccttcaaaatgttcatgcacttaagatgatc
ctggagaaagagtcttgggtgaaaatgccagcggaggcactgcaagtaatcagtttggct
ggccttattggtgatgcttctcctttgattgttccttttgtcagtaatacttccactgtt
tcagcacttcactctaaaaagtcttatgatccagcgtttagtggcaagcagaatagtgga
tttgtttattggcttaagttagaaaatccattttcttcaaagctggcatctggctctaag
gaatcaccgaaggctcatttattattcagtgaatcaagggcttcaagtttaactgatggg
catgctgttgatctcttacatgataacagtatttctgcaaagaatcattatggtaatcat
gtaaatggaagtaattctgttctagaggatgaaaatgaagaccttcttgctgactttatt
gatgaagatagtcagcttcctagtcgaatatctaaacacacacttgctagaaaacattct
gcaaattggaatgacgaagaggtttcagcccaaacagggtcctcactttgtctactgagg
ttaatggacaaatatgccaggctcatgcagaaattggaaatagtcaatgttgagttcttc
aagggaatctgccaactgtttgggattttttatcatcatatttttgagacatttggccag
cgggacacaaatcaaagtggaaaattcttaccagatactctatcctctcggcttaaaaca
gccttatcgaaaattatgcaagattgtgatgtgtggatcagaccccaaaatgcatcatgt
tctccctcatcacctgtctcattaaatacgacattcacacatatggatgtaatgcctact
atacctcctagcaccgtgttcgggcatgcaccaagtactttatttgggttgaaggaaaga
tgtgcaggtgctgaaacaatatcattagttgcacgcgtattgtatagatcaaaaaaccat
ctccagtcaatgctattacagcacaatgcaactatagttgaagatttttttggtaatctg
gtggattctgttccagatctgtccgagcacattcataggacaacggcaagtatgcttcta
catatcaatgggtatgcagataagattacaaatgcgaaatgggaggtgaaagatcttggg
ttagagcacaatgggtatgttgacttgttgttgggagaatttaaacattataaaacaagg
cttgcacatggtggaatctctaaggaggttcaggatctcctcctggaatatggacttgaa
aatgttgcagaagtacttattgaaggcctatcacgagtaaagagatgcacagatgaagga
cgggtcttaatgtcattagaccttcaggtcttaattaacggactacagcactttgtttcc
ataaatgtgaagccaaagctgcaagttgttgaaacatttatcaaggcctactatcttccc
gagactgaatatgtgcactgggcacgatctcatccagaatacagtaaaagccaaattgta
gggttaattaaccttgttgctactatgaaaagctggaaaaggaagacgaggttggaagtt
ctagagagaattgaagccagcatttag
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