Phoenix dactylifera (date palm): 103719936
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Entry
103719936 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103719936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103719936
03012 Translation factors [BR:
pda03012
]
103719936
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103719936
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103719936
Translation factors [BR:
pda03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103719936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_23
AAA_16
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
103719936
NCBI-ProteinID:
XP_038974852
UniProt:
A0A8B8ZNE3
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MPRGLGLGLGLLLSFRRSPGAPGDRRFRALPFLLRHLIYYSGGDVGFRRWAGGRRGFCGY
AVEQFSDDDYEYEFDNQKPSSSVANIDEWRWKLSLLLRSTDKQEIVSRDKRDRRDYEQIS
NLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVISLSLQRRVEGLLQEHLDR
MLLTSSKVSDKLETNSAIKDVEDVSPDENQYSLVDGSVMEKVLQRKSWRMRNLQRTWQES
PEGMKMLRFRNSLPAYKEKEKLLSAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG
AFCNIICTQPRRISAMAVAERVSAERGENLGETVGYKVRLEGMKGKNTHLLFCTSGILLR
RLLGDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNY
FGGAPTIHIPGFTYPVRAHFLEDILEKTGYKFTSFNQIDDYGQEKLWKTQRQLMPRKRKN
QIAALVEDSQKNSSFESYSSRVRDSLACWNPDCIGFNLIEAVLCHICRKEQPGAVLVFMT
GWDDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAE
ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLY
PRCVYDAFPEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPEPLAVQNAVELLK
MIGALDEKENLTNLGRYLSMLPVDPKLGKMLIMGAVFCCFDPVLTIVSGLSVRDPFLLPQ
DKKDLAGTAKTRFAAKDYSDHMAVVRAYEGWKDADREGSAYEYCWRNFLSAQTLQAIHSL
RKQFNFILKDAGLLHADPSTNNSLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDD
GQVLLYANSVNARYQTIPYPWLMFGEKVKVNTVFIRDSTGVSDSILILFGGTLIKGDMAG
HLKMLDGYLDFFMDPSLAGCYWNIKEELDKLIQKKLQDPSIDIQKEGKYLMLAVQELVTG
DLCEGRFVFGRETKRAGFSSNDGDRSNVVKAGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRAIVEFKGMQFVGKPKKNKQLAERDAAIEALGWLTHTSDNSHQDVDDDSPPDITDNM
LKLLNGRRRRSRRHSS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcggattaggtttagggttagggctgcttctgagcttccggaggtcccctggg
gcaccgggtgatcgaaggtttagagctcttccctttcttttgcggcacttgatctattat
agtggtggagatgttggctttcgacgctgggccggcgggcggcgcggtttctgcgggtac
gccgtggagcagttctctgacgatgactacgagtacgaattcgataaccaaaagccatct
tcttcagtggccaacattgatgaatggaggtggaaacttagtttgctcttgcgtagtact
gataagcaggagattgtctctagagataaacgagatcggcgtgattacgaacagatctct
aaccttgcaaagagaatggggctttacagcgagatttatgggaaagtggtggttgccagc
aaggttcctttgccaaattacaggcctgatcttgatgataagcggcctcaaagagaggta
gtaatctctcttagcttgcaaaggagggttgagggtctacttcaggaacaccttgaccgg
atgcttttaacatccagcaaggtcagtgataagttggaaaccaattctgccattaaagat
gttgaggatgtaagtccagatgaaaaccaatactcactggttgatgggtcggtcatggaa
aaggttcttcagagaaagagttggcgtatgcggaatttgcagagaacctggcaggaatca
cctgaaggcatgaagatgctacgatttaggaattctcttccagcatacaaggaaaaggag
aaactcttgtctgccattgcacggaatcaggtcatagtgatctctggggagactggatgt
gggaaaactactcagcttcctcaatacatattggaatcagagatagagtctggtcgtgga
gcattctgtaacatcatatgtacacaaccacggagaatatctgctatggctgttgcagaa
agagtttctgctgaaagaggagagaatctgggtgaaacagttggttacaaagttcgatta
gaaggaatgaaaggaaaaaatacacatctgcttttttgtaccagtggcattttgctaaga
agattgctgggtgaccgtaatttaaatggtataactcatgtatttgttgatgaaattcat
gaaagaggcatgaatgaagattttttattgattgtgttaaaggatcttcttcctcgtcgt
cgtgatctgagattgattttgatgagtgccactttgaacgctgaattgttctcaaattat
tttggtggggcacctacgatccatattcctggtttcacataccctgtaagggcgcacttt
ctggaagatatattggagaaaactggatacaagtttacttcattcaaccaaattgatgat
tatggccaagagaaattgtggaaaacacagaggcagctaatgccgagaaaaaggaaaaac
caaatcgctgcacttgttgaggattctcagaaaaactcaagctttgagagctacagttcc
agggttcgtgattctttggcttgttggaacccagattgcatagggtttaatcttattgag
gctgttctctgtcatatatgtcggaaggaacagccgggtgctgttttagtgttcatgact
ggctgggatgacattagttgcttgagagaccaactaaaagcacatcctctgttaggagat
ccaaacagggtcttggtgcttacatgtcatggatcgatggccacttctgagcagaaactc
atatttgagaagccaccaccgaatgtacgtaagattgttcttgctacaaacatggcagaa
gcaagtatcacaattaatgatattgtttttgttgttgactgcgggaaagcaaaggagacc
acatatgatgctttgaataataccccttgtttgctcccatcttggatttcaaaagcttct
gcccgccaaagaagaggtagagctggtcgtgtgcaacctggagaatgctatcatctctat
cctagatgcgtttatgatgcctttccagaatatcagcttccggagcttctaagaactcct
ctgaactccttatgcttgcaaataaaaagtttgcagcttggtactataggggaattcttg
tcagctgctttgcagcctccggaacctctggctgtccaaaatgcagtggaattactgaag
atgattggagcattagatgagaaggaaaaccttacaaatcttgggcgatatctctcaatg
cttccagttgatccaaagctagggaagatgctgatcatgggtgctgtcttttgttgcttt
gatccagttttgacaattgtgtctgggctaagcgtccgggacccattcctgttacctcaa
gacaagaaggatttggcaggaacagcaaaaacaagatttgctgcaaaagactacagtgat
catatggctgtggtccgtgcatacgaaggatggaaagatgcagatagagaagggtctgct
tacgagtattgttggaggaattttctttcagcccaaactcttcaggctatccattccctt
cgaaaacaattcaattttattttaaaagatgctggattattacatgctgatcccagcacc
aataatagcttgagccataatcagtcactggttcgtgctattatatgctccggcctcttt
ccgggaatagcatctgttgtgcacagggagaagtctatgtctttcaaaacaatggatgat
ggccaggttctactttatgctaactctgtaaatgctaggtaccagactatcccttaccca
tggttgatgtttggtgagaaagttaaagtcaacactgtctttattcgtgattctactggt
gtatctgattccatactgatcctatttggtggcactcttattaagggagacatggctggg
catctgaagatgttggatggctaccttgacttcttcatggatccaagtttggcaggatgc
tattggaacatcaaggaagaacttgataaacttattcagaagaagcttcaagaccccagc
atagatatccaaaaggaaggcaagtacctaatgcttgctgtgcaggagctagtcacaggt
gatctatgcgaaggaaggtttgttttcggccgggaaacaaagagggccgggtttagcagc
aacgacggtgacaggagcaatgttgtgaaggctgggacaaacccgaagagcttgctacag
actttgttgatgagggcaggccacagccctccaaaatacaagacaaaacacctcaaaacc
aatgagttcagggcaatagtagagttcaaagggatgcagtttgtgggtaagcccaagaag
aacaagcagctcgcagagagggatgctgccatagaggcattgggatggttgacacacact
tctgataacagccaccaggatgtggatgatgactctccacctgatataactgataacatg
ctgaagctactcaatgggcggaggcggcggtcaaggcgtcattcaagttga
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integrated database retrieval system
