Phoenix dactylifera (date palm): 103720771
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Entry
103720771 CDS
T03274
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103720771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103720771
Spliceosome [BR:
pda03041
]
Complex A
U1 snRNP components
U1 related factors
103720771
Complex B
103720771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
103720771
NCBI-ProteinID:
XP_008808868
UniProt:
A0A8B8ZZ34
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All DBs
Position
2:complement(21071033..21104395)
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AA seq
1051 aa
AA seq
DB search
MASNPQSSGAQPLRPAVVGSTGPPQNFGPPMSMQFRPVVPAQQTHQFIPAASQQFRPVGQ
GVPGSNIGIPSGQTQMHHFPQPAQHLPRSGPPAPPSSQAIPMPYGQPSMPMTSGSLQPQQ
NPQMQNSHLPNLGGIGMPLSSSYTFATSYCQPPNTLNNPSQYQPASQMQAPITPAMGQPW
SAPGTQNVPLVTPLVQAAPQSSATGAAVGTAATTNAQPRSSEQVSSDWQEHTSVDGKRYY
YNKKTRQSSWEKPLELMTPIERADASTDWKEFSTSDGRTYYYNKVTKISKWIIPDELKLA
REQALRAAAQQAHTETGTASVAPVAPTVSSGEIPSATTDSVTPGTTSAVVSSSVPVAVNS
ITPPAVMASVSPSVVPSAGISSSSSLGIPNTIGSSNLQTTVTPLPAPVSANTVVSTVAIE
SASSNTKSNHDSSSLLNTASVPDGASAQDLEEAKKAMPVTGRVNVTPLEEKTIDEEPLVY
SNKQEAKAAFKALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKK
QEAEERRIKQKKAREDFTRMLEECKELTSSTRWSKAVTMFENDERFHAVERARDREDLFE
SYLVDLQKKERAKAAEEHKRNIMEYRTFLESCDFIKANTQWRKVQDRLEDDERCSRLEKI
DRLEIFQEYIHDLEKEEEEQRKIQKEQLRRLERKNRDEFRKLMEEHVAAGILTAKTHWRD
YCMQVKDLPPYIAVSSNTSGSTPKDLFEDVAEELDKQYHEDKAQIKEAIKIRKIALASSW
TFEDFKAATSGDDSLQGISETNMKLVFDELLERLREKEEKEAKKRQRLADNFSDLLYSIK
EITASSRWEDCKSLFEDTQEYRSIGDENFVKEIFEEHVAHLQEKLKEKERKREEEKAKKE
KEREEKEKRKEKERKEKEERKEKEREREKEKGKDRSRKDEAESENVDMMDSHGSKDKKRE
NDKERKHRKRHHSMVDDVSSEKDDKEESKKSRRRRHSGDRKKSRKHTYTTDSDSENRHKR
HKKDRDGSRRNGGYEELEDGELGEDGEIHAV
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaatccgcagtcttctggggcacagccccttaggcctgcagtggtggggtcc
acaggtccacctcaaaattttggtcccccaatgtctatgcagttcagacctgtggttccg
gctcagcaaacacatcagttcatcccagcagcttctcagcaattccgacctgttgggcaa
ggtgttcctggttcaaatattggaataccttctggtcagactcaaatgcaccattttcct
caacctgcacagcatctgccaagatcaggtccgccagcaccaccttcttcacaagcaatt
ccaatgccatatggtcagccaagtatgcccatgacatctgggtcactgcagccccagcaa
aatcctcagatgcaaaacagtcatctgcctaatttaggtggcataggaatgcccctttct
tcatcttatacatttgcaacatcttattgccagccaccaaatactcttaataacccatcc
cagtatcaaccagcatcccagatgcaagcacccattacacctgcgatgggacaaccgtgg
tctgcacctgggactcagaatgtacctcttgttacacctctggtgcaggctgcaccacaa
tcttcagctacgggggctgcagtgggcacagctgctacaacaaatgcacaacctaggtct
tctgaacaggtctcttctgattggcaagagcacacatctgttgatggaaaaagatattac
tacaataagaagactagacaatctagctgggagaagccccttgagttgatgacgcctatc
gagagggctgatgcctcgactgattggaaggagttcagcacttcagatggacgaacatac
tattataacaaggtcacaaagatatcaaaatggataattcctgatgagctcaagttagct
cgtgaacaagcattaagggctgcagctcagcaggcacatacagaaactggaacagcttcc
gttgccccagttgctccaactgtttcgtctggagagatcccttctgccacaacagactct
gtgactcctggaacaacatctgcagtagtatcaagctcagttccagtggcagtcaactca
attacaccaccagctgtgatggcttcggtatcaccatctgttgtaccatcagctggaatc
tcgtcgagttcctccttgggaattccaaacacaattggctcatcaaatcttcagacaact
gtaactccattacctgcacctgtttctgctaatacggtggtatctactgttgcaatagaa
tctgcatcatctaacactaagagtaatcatgacagctcatctctcctaaatactgcaagt
gtgcctgatggtgcttctgctcaggatttggaggaagctaaaaaggccatgccagttact
ggaagagtcaatgtcactccattggaggagaaaacaattgatgaagaacctttggtttat
tctaataagcaggaggcaaaagctgcattcaaagccctactggaatctgcaaatgttgaa
tctgattggacttgggagcaggcaatgagagttattatcaatgacaagagatatggtgcg
ttaaagacccttggtgagaggaaacaagcatttaatgagtacttgggacaaaggaaaaaa
caggaagctgaggaaaggcgcattaaacaaaagaaagcacgagaagacttcaccagaatg
ttggaagaatgcaaagaattaacttcgtcaacccggtggagtaaagccgtgaccatgttt
gagaatgatgaacggtttcatgctgttgagcgggcaagagatcgtgaggatctatttgaa
agctatttggtggatctccagaaaaaggaaagagcgaaggctgccgaggagcataaacga
aatataatggagtatagaacttttcttgaatcttgtgactttattaaggcaaacacccaa
tggaggaaagttcaagatcgactggaggatgacgaaagatgttctcgacttgaaaaaatt
gatcgtttggagatcttccaggagtacatacatgatctggaaaaggaagaggaggaacag
cggaagatacagaaggagcaattaagacggctggagcgcaaaaaccgtgatgagttccgc
aaattaatggaagaacatgttgctgctggaattcttacagctaaaactcactggcgcgat
tactgtatgcaggtgaaggatttgccaccttacatagcagtatcatcaaacacatcaggt
tcaacaccaaaagatctgtttgaggatgttgcagaggaacttgacaagcagtaccatgag
gacaaggcccagatcaaagaagcaattaagatccgaaagattgctttggcatcttcatgg
acatttgaagatttcaaggctgctacttcgggtgatgacagcctacaaggaatatcagag
acaaacatgaagcttgtttttgatgagttactggaaaggcttagggagaaggaggagaag
gaggctaagaagcgccaacgtcttgcagataatttttctgacctgctttactcaattaag
gaaataactgcttcatctagatgggaggactgcaaatcactgtttgaagacacccaagag
tacaggtccattggtgatgagaactttgtaaaagagatttttgaagaacatgtagcccac
ttgcaagaaaagctgaaagagaaggagcgtaaaagagaagaggaaaaggcaaagaaagag
aaagaaagagaggagaaagagaagaggaaggagaaggaaaggaaagaaaaggaagaaagg
aaggaaaaagagagagaacgcgaaaaagagaagggaaaggaccgatctagaaaggatgaa
gcagaaagtgaaaatgttgatatgatggacagccatggctcgaaggataaaaagagggaa
aatgataaggaaagaaagcaccggaaacgtcaccacagcatggttgatgatgtaagctct
gaaaaagatgataaagaggagtccaagaagtcccgtaggcgtaggcatagcggtgaccgc
aaaaaatcgcgtaagcacacttacactaccgattcagatagtgaaaatcgacacaagagg
cataagaaagatcgagatgggtcccgtagaaatggtggttatgaagagcttgaggatggg
gaacttggagaggatggggaaatacatgctgtctaa
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