Phoenix dactylifera (date palm): 103720837
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Entry
103720837 CDS
T03274
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103720837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103720837
03019 Messenger RNA biogenesis [BR:
pda03019
]
103720837
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103720837
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103720837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103720837
NCBI-ProteinID:
XP_008808980
UniProt:
A0A8B7CXY2
LinkDB
All DBs
Position
Unknown
AA seq
1065 aa
AA seq
DB search
MEEERLHSSRENPRFPPGDRPPRLAAAAEQQPLPASRPPPSILDRFRAMLREREEELREA
TGEDPPPSPPPPHTAGEIVRLYKELLSELTFNSKPIITDLSIIAGQHSQFAEGIANAICA
RILEVPVDQKLPSLYLLDSIVKNIGRDYVRYFAARLPKVFCEAYNQVHPTQYPSMRHLFG
TWFQVFPLSVLRKIEDELQFSPTENKQSSGMSSTRHSESPSSRPSHGIHVNPKYLEARQQ
LKHPTLMCAADGHDKVHTTDFDGERMEGRASEGSKGWQGASPKFHDIEHVRGVSSSLQVY
GKKSSMQCSEYNIDHPEVLPARPGVARTGSPQTAATCTASMVEVEGPTRQLKIKISRPSP
PPIIGPRKSISPPVDRFSRDTSPRRMRERASPSHSGFVYGPGRGTSQNGWLERRRPFDDG
AQQIQASMAFNLNNGYAKQRSRELIDAYGNYTGKSFSLEKLPKVPRLDVNSVASERASRK
WKNSEEEEYVWEDMSPTLSDRSRRNSLPPFGPSTGSLSTRAGLTRPDASLLDHDSGRRSW
PGQAQLPAVGDPANTIEDRIPVFGPAHGSMNRKYLDSTVSQNDWLPPYQGSHHTHEPRKL
PYMFPKSSQHNLSPRSRRRAHQMPVAASGITSLVSNKLPSPYEHTTDMEVPFSRLSSSHS
DPFDVDTSTLERHLAQRPHSPPPPPIVRPSVHNNQQLPLLPIPPNQKQLKSPFDDVEAHK
PIPNQRPESFLYLSQYQNDTADRKTLNSNKLLQVPYQQPGLAHSNQQSQEQGTTMQIQSQ
KSNGSIILPASAQLSSQMVAQPLNHVPNHLSGLPSVGVNSMPDTSLHVNASVLPPLPPGP
PPASSQMGPVLQNTGSMISSSPAGAFSGLISTLMAQGLISLTPPAQSQDSVGVEFNAELL
KVRHESVINALYTDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVS
AKEWLSGAETLGNDVVPGFLPTETVTEKREDKEMAVPADENQNVCALCGEPFEDFYSDEA
EEWMYRGAVYLYARDGYTEGLDRSQLGPIVHAKCRSESKEGSGQA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaggcttcattcctcgcgggagaaccctagattccctccgggggaccgg
cccccacggctggcggcggcagcggagcaacagcccctgccggcctcgcggccgccgccg
tcgatcctcgaccggttccgtgccatgctccgggagagggaggaggagctgcgggaggcc
accggcgaggacccgcccccgtccccgcccccgccccataccgccggcgagatcgtccgt
ctctacaaggagctcctctcggagcttaccttcaactcgaagccaatcatcaccgatctc
tccatcatcgccgggcagcattcccagttcgcagaggggatcgccaacgccatctgtgcg
cggattcttgaggtccctgtagatcaaaaattaccctcattgtatcttctggatagtatt
gtgaagaacattggtcgtgattatgtgagatattttgcagctcgcctccccaaggtgttt
tgtgaggcatataatcaagtccatcccacccagtatccttccatgcgccacctttttggg
acttggttccaggtcttccctttatcagtacttcgtaagattgaggatgaactccaattt
tctcctaccgagaacaaacaatcatcaggaatgtcaagtacaaggcactctgaatctcca
tcttctcgtccatctcatggcattcatgtaaatcctaagtacctagaagcacgacagcag
ttgaaacatccaactttgatgtgtgcagcagacggtcatgataaggtgcatactactgat
tttgatggggagcgaatggagggacgtgcatcagagggctcgaaaggatggcaaggagct
tctccaaaatttcatgacattgaacacgttagaggagtttcttccagtttacaagtttat
gggaagaaatcttccatgcaatgcagtgagtacaatattgatcatcctgaggtgcttcct
gcacgaccaggggtagcaagaacaggttcaccacaaactgcagccacatgcacagcctcc
atggttgaagtggaaggtccaactcgtcaattaaagatcaagatttcaaggccttcacca
cctccaataattggaccacgaaagtctatatcaccacccgttgacagattctcaagagat
acctctcccaggaggatgcgtgaaagggcttctccatctcattcaggatttgtatatgga
cctggcagagggactagtcagaatggttggcttgagaggagacggccttttgatgatggt
gcccagcaaatacaagcttccatggcattcaaccttaataatggatatgccaagcagcgc
tcaagagaactcattgatgcatatggaaattatacagggaaaagtttttctcttgaaaag
cttccaaaggtaccacggcttgatgtgaatagcgtggccagtgagagagcttctagaaaa
tggaagaattctgaggaagaagagtatgtttgggaggatatgagcccaactttatctgat
cgaagcagaagaaacagcctgccaccctttgggcccagtactggaagcttgagcacaaga
gctggtttaactagaccagatgcttcgctgctggatcatgattctggaaggcgcagttgg
cctggccaagctcagctgcctgcagttggtgatcctgctaataccattgaagataggata
cctgtatttggtccagctcatggatcaatgaataggaagtacttggatagcacagtaagt
cagaatgattggttgccaccctatcagggttctcaccacactcatgagcctcgaaagttg
ccatacatgtttccaaagtcttcacagcataaccttagtccacgatcacgaagaagggct
catcagatgcctgttgcagcaagtggaataacatctttagtcagcaataaattgcccagt
ccatatgaacatacaacagatatggaagtgccattttcgaggttatcaagctcccattct
gacccttttgatgtggacacatccacattagagaggcatttggcacaaagaccacattcg
ccccctcctcctccaattgtacggccttctgttcataataatcagcagctgcctctacta
cctattcctccaaatcaaaagcagttgaaaagtccttttgatgatgtggaagctcacaag
cctataccaaaccaaaggccagaatcatttttgtatttgtctcagtatcagaatgacact
gctgatagaaaaacattgaactcaaataagttactccaagtaccatatcaacagcctggc
ttagctcattcaaatcaacagagtcaggaacaaggcactactatgcaaattcagtctcag
aagtctaacggaagcattattctgcctgcgtcagctcagctttcatctcaaatggttgct
cagcccttaaatcatgtacctaaccacttatctgggctaccttctgtgggagtgaacagt
atgcctgatacctctttacatgtaaatgcaagtgttttaccccctttgcctccaggacca
cctcctgcctcatcacagatgggacctgtgttgcaaaatactggctctatgatatctagc
tcgcctgcgggtgcattttcaggcctgattagtactcttatggcacagggtttgatttca
ttgacaccaccagcccaatctcaggattctgttggagttgaatttaatgctgaacttctt
aaggtgcgacatgaatctgtgattaatgctttgtatactgatcttccaaggcaatgcaca
acatgtggcttgcgtttcaagtgccaagaagagcacagcagtcacatggattggcatgtg
actaaaaaccgaatgtctaagaatcgtaagcaaaagccatctcgcaaatggtttgtaagt
gcaaaggaatggcttagtggggcagaaacacttggaaatgatgttgttcctggctttttg
cctaccgaaactgttacagagaagagggaagataaagaaatggcagtcccggcagatgaa
aatcagaatgtgtgtgcattatgcggggagccttttgaggatttttatagtgatgaggct
gaggagtggatgtacagaggggctgtatatttgtatgctcgagatggatatactgaaggt
ttagacaggtctcaattgggccccattgtccatgccaagtgcaggtcagagtccaaggaa
ggatctggacaagcttaa
DBGET
integrated database retrieval system
