Phoenix dactylifera (date palm): 103720841
Help
Entry
103720841 CDS
T03274
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03008
Ribosome biogenesis in eukaryotes
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103720841
09123 Folding, sorting and degradation
03018 RNA degradation
103720841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103720841
03019 Messenger RNA biogenesis [BR:
pda03019
]
103720841
03009 Ribosome biogenesis [BR:
pda03009
]
103720841
03016 Transfer RNA biogenesis [BR:
pda03016
]
103720841
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103720841
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103720841
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
RNases
103720841
Transfer RNA biogenesis [BR:
pda03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103720841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF530
Motif
Other DBs
NCBI-GeneID:
103720841
NCBI-ProteinID:
XP_008808990
UniProt:
A0A8B7CY20
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEPVEIDGVKIPVDTSKINPNGMEYDNLYLDMNGIIH
PCFHPEDRPAPTTFDEVFQCMFDYIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFK
AAKDAADAAAEEERLRQEFEKEGRKLPPKLESQVFDSNVITPGTEFMAVLSFALQYYIHL
RLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGNAKRKAGEFDEKNEDVVKKPF
QFLQIWTLREYLEYEFRIPNPPFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKEFRAMGGYLTDSSKPNLGIVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRE
KEQAKRGDDVEPDVKPELIVPVARFQGSRLASGALPSPYDQSGPSNRSENTKKDNQVRQA
TTAMQVLNIKSNQSNTYDSKGINFRAQKVARILSEGATVGAAIVEAENSLDLAIQENREE
LKTKLKEVLREKSDIFNSEAPEEDKVKLGAPGWKERYYEEKFSVKTPEEVEAVRRDVVTK
YAEGLCWVMRYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFQLGVPFKPFNQLMGVF
PAASSHALPLHYRQLMTDPNSPIVDFYPTDFEVDMNGKRFSWQGVVKLPFIDETRLLAEI
EKVEHTLTEEEVRRNSVMADMLFVNVSHPLSPYIFSLSSNSGQLSEKERAEVEEKLDPRA
SGGMNGYLSLCDGDPCPPVFRSPVKGMEDIMDNQVICSLYILPDAHKHITRPPPGVIFPK
KTVTAGDLKPPPVLWHEDTGRKPFENGRQNPPGTISGRQLGAAAHRLVINSLQNSADRNG
GDASYAPPSYEMAANSRLYSNGRDHSIDRRAAARVEHQASNAQWHGPGNHLRNSHGQWYA
SSASNHHHYERRISHHYERDQQGRSHYTPTGRHSQPDVRGRVPVQSYPQNGGHPYHSVNR
SAALPLIPGPYGHPGAVYHGGYGGYPNYGAQQWDQRHDPRTGPLPSQPAVGRGYPHNQQS
TNRFAALERGSNRRPPPPPGYGRY
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggcgttctaccggtggctggcggagaagtacccgatggtggtggtggac
gtcgtggaggaggagccggtggagatcgatggcgtcaagattcccgtcgatacctccaag
atcaaccctaatggcatggaatacgataacctctaccttgatatgaatggtatcatccat
ccctgcttccaccccgaggatcgacctgctccaactacctttgatgaggtattccagtgc
atgtttgattacattgatagactttttgccatcgttcgccctcggaaacttctatacatg
gcaattgatggtgttgcaccgagagctaagatgaaccagcagcgctccaggcgatttaag
gcagcaaaagatgcagcagatgcggcagctgaagaagaacggttacgtcaagagtttgag
aaggaaggcagaaagcttcctccaaaactggaatcacaagtttttgattctaatgttatc
actcctgggactgaatttatggctgttttatcgtttgcactacagtattatattcatttg
agactcaattatgaccctggatggaaacagatcaaagttatcctttctgatgcaaatgtt
cctggtgaaggggaacacaaaattatgtcatacattcgcctgcaacgaaatctacctggt
tataatccaaatactcggcactgtttatatggtttggatgcagatctgattatgttagct
ttggcaacgcatgaagtgcatttttcaatcttgagggaggtcgtgttcactcctggacag
caagacaagtgtttcttgtgtggtcaaatgggccatttggctgcagattgccagggaaat
gccaaaagaaaagctggagaatttgatgagaagaatgaagatgttgtaaaaaagcctttc
cagtttcttcaaatctggactcttcgggagtatttagaatatgaattcagaattcctaat
cctccttttgagattgactttgagcgcatagttgatgattttatcttcatgtgcttcttt
gtcggcaatgactttctgccacacatgccaactttagaaattcgtgagggtgcaataaat
ttattaatggctgtctataagaaggagtttagggcaatgggtggctatttgacagactcg
agcaagccaaatttgggcatagttgagcattttattcaggcagttggatcatacgaggat
aagatatttcagaaaagggctcggttgcatcagcgccaagctgaaagaataaaacgtgaa
aaggaacaagcaaaacgaggagatgatgtagagccagacgtcaaacctgagcttatagtg
cctgttgctcgttttcaaggttcacgtcttgcatctggtgctttgccttcgccatatgat
cagagtggaccttcaaacaggtcagaaaatacaaaaaaggataaccaagttagacaagct
actactgccatgcaagtgcttaatattaagtctaatcagtctaatacatatgatagtaag
ggaataaattttcgagcccaaaaggtagcacgcattttatcagaaggagcaactgttggt
gctgctattgtggaggctgagaatagtcttgatttagcaattcaggaaaatagggaggag
ttgaaaacaaaacttaaggaagtgcttcgtgagaagtcggatatttttaactctgaagct
ccagaggaggacaaggtaaaactgggagcaccaggatggaaagaaagatattatgaagaa
aaattttctgtaaaaactcctgaagaagttgaagcagtgcgaagagatgttgtcacaaag
tacgcagaaggcttgtgttgggttatgcgctattactatgaaggggtttgctcatggcaa
tggttttatccttaccattatgcaccttttgcatctgacctcaaggatttaggtcaattg
aatataagctttcaactaggtgtgccttttaaacctttcaatcagctaatgggggtgttt
ccagctgcaagttcccatgctcttcctttgcactataggcaattgatgactgatccaaac
tctcccatagtcgatttctatccgactgattttgaggtagatatgaatgggaagagattt
tcttggcagggtgttgtaaaactgccttttatagatgagactcgattacttgctgagatt
gaaaaagtggagcatactttaacggaggaggaagtccgtcggaacagtgtcatggctgac
atgcttttcgtaaatgtgtctcaccctctctctccatatatattttctcttagtagcaat
tctggacaactgtcagagaaagagcgtgctgaagtagaagaaaaacttgacccaagagcc
agtggtggaatgaatggatatttgtccctttgtgatggagatccatgccctcctgtcttc
aggtctcctgttaaaggaatggaagatataatggataatcaagtcatatgttctttatac
atacttccggatgcacataaacatatcactagaccgccaccaggcgtcattttcccaaag
aagactgttacagctggtgatttgaagccacctcctgtcctatggcacgaagatactggc
aggaagccatttgaaaatggaaggcaaaatcctccagggactatttcaggccgccaactt
ggagcagcagctcatcggcttgtcataaacagtctacagaatagtgcagaccgtaatggt
ggtgacgcaagttatgctccaccatcatatgagatggctgcaaatagtagactatattca
aacggcagagaccattctatagaccggagagcagctgctcgggtagagcatcaagctagc
aatgcacagtggcatggtcctggtaaccatttacgtaacagtcatgggcagtggtatgct
tcttcggcgtcgaatcatcatcactatgaaagacgtatatcacatcactatgaaagagat
caacagggtaggtcccattataccccaactggaagacacagccaacctgatgtgagggga
agagttccagtgcagagctatcctcaaaatggaggtcacccttatcattcggtaaataga
tctgcagcactgccactaattccaggaccctatggtcatccaggggctgtataccatggt
ggctatgggggctatccaaattatggagcacagcagtgggatcaacggcatgatcccagg
acaggccccctgccatctcaacccgcagttgggagaggttatccgcataaccaacaaagt
accaatcgttttgcagctttagagaggggctcaaaccgaaggccgccaccaccaccaggg
tatggccgatactag
DBGET
integrated database retrieval system
