Phoenix dactylifera (date palm): 103720870
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Entry
103720870 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103720870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103720870
03041 Spliceosome [BR:
pda03041
]
103720870
03009 Ribosome biogenesis [BR:
pda03009
]
103720870
03016 Transfer RNA biogenesis [BR:
pda03016
]
103720870
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103720870
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103720870
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103720870
Complex C
U4/U6.U5 tri-SnRNP related factors
103720870
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
Helicases
103720870
Transfer RNA biogenesis [BR:
pda03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103720870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
103720870
NCBI-ProteinID:
XP_008809035
UniProt:
A0A8B7CY43
LinkDB
All DBs
Position
17:7541043..7553233
Genome browser
AA seq
991 aa
AA seq
DB search
MASVKRKILEELAVDLVRPQKAAREEAEPAYIDESVSCLHDVSYPEGYVPDRPSASRPAG
EKPKPAKEFPFELDPFQSEAIKCLDSGESVMVSAHTSAGKTVVALYAIAMSLRDQQRVVY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMLYKGSEIMREVA
WIIFDEVHYMRDRERGVVWEESIVMAPKNSHFVFLSATVPNAKEFADWVAKVHRQPCHIV
YTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALIPAREGEKKRENGKWQK
GIVAGKPSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKVNIE
TIFWSAMDLLSDDDKKLPQVTNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDQRGICILMVDE
KMEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPEKLLRYSFYQFQADRALPDL
EKQVKELEIERDSIIIEEEESLKEYYNLLQQYRSLKNDVRDIVFSPKYCLPFLQPGRLVR
IQCTNDDENPSFSTDAFVAWGVIINFEKVKIPGEDKHPEDANYTVAVLTRCVVNKEVGSK
KSMKIVPLNERGEPAVVSLPLSQFESLSSIRLFIPKDLLPLESRENTLKKVSEVLSRFAK
DGIPLLDPEEDMKVQSNSYRKAVRRIEALESLFDRHEIRNSPLIQQKLKVLRAKQELTAK
IKSIKKTMRLSTSLAFKDELKARKRVLRRLGYITSEDVVELKGKVSCEISSADELTLTEL
MFSGVLKDVNVEEMVALLSCFVWQEKLQEAQKPREELDLLFSQLQETARRVANVQLECKV
QIDVENFVNSFHPDIMEAVYAWARGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
KSIGETQLESKFEEAVTKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtgaagagaaaaatcctagaagagctggccgtggacctcgtccggcctcag
aaggcggcgagggaggaggcggaaccggcctacatcgacgagtcggtgtcctgcctccac
gacgtctcctatcccgagggctatgtcccggatcgcccgtccgcctcccgccccgccggc
gagaaacccaagccggccaaggagtttcccttcgagctcgaccccttccagtccgaagcc
atcaagtgcctcgatagtggcgaatctgtcatggtgtcagcacatacgtcagcagggaag
acagtggttgctttgtatgctattgccatgtccttgcgagaccagcagcgggtcgtctat
acctctccgatcaaggctcttagcaaccaaaagtatagagaatttaaagaggagttctct
gatgttggtctcatgacaggggatgtgacaattgagcctaatgcctcatgcctggtcatg
accaccgaaatttggcgcagtatgctgtacaaagggtcagagattatgcgggaggtggct
tggatcatttttgatgaagtccattacatgcgtgacagggagagaggagttgtttgggaa
gagagtattgtaatggctccaaagaactcgcattttgtatttctctctgcaacagttcct
aatgcaaaggaatttgctgactgggttgcaaaggttcaccggcagccttgtcacattgtc
tatactgattatcggcctacacctctacagcactacatttttccttctggtggtgatggc
ttatatttggtggtggatgagaagggaaaatttcgagaagacagttttcaaaaatcttta
aatgcacttattcctgcgcgtgaaggtgagaagaaaagggagaatgggaagtggcagaag
ggaatagtagcaggcaaacctagtgaggagagtgacatatttaagatggtgaagatgata
attcagcgccagtatgatcctgtcatacttttcagctttagcaaacgggaatgtgaattt
cttgcaatgcagatggcaaagatggacttaaatgaagatgatgagaaagtgaatattgaa
accattttttggagtgcaatggatctgctttctgatgatgacaagaagcttccccaggtt
acaaatatgctaccactcttgaaacgtggaattggtgtacatcattctggtctacttcca
attctgaaggaagtgattgaaatactctttcaagaaggcctcatcaagtgtttgtttgcc
acagaaaccttcagtataggtctgaacatgcctgccaaaactgtagtttttacaaatgta
cgcaaatttgatggagataaattcagatggatatccagcggggagtatatccagatgagt
ggccgtgctggccgacgaggtattgatcagcgtggcatttgcattctaatggtggacgag
aaaatggagccatctacagctaaaatgatgctcaaaggaagtgctgattgtttaaacagt
gccttccacctgagctacaacatgctgttaaaccaaatgcgttgcgaagatggtgatcca
gaaaaacttcttcgatactcgttttatcagtttcaagctgatcgggcccttcctgatctc
gagaaacaagtaaaggaattggaaatagagagagactccattattattgaagaagaggag
agcttgaaagaatattacaatctcttacagcagtacagaagtttgaagaatgatgtccgt
gatattgtgttttccccaaagtactgtttaccattcctgcagcctggaaggcttgtgcgc
attcaatgcactaatgatgacgagaatccatctttctcaacagatgctttcgtggcatgg
ggagtgattattaattttgaaaaggtgaaaatcccaggtgaagataaacatcctgaggat
gctaattatacagttgccgtcctcacaaggtgtgttgtgaataaggaagtgggttcaaag
aaatccatgaagattgttcctttaaatgagcgtggagaacctgctgtggtttcattgcct
ctttctcagtttgaaagcttaagcagcatccgtctattcatacctaaggatctcttgcca
ctagaatctcgggagaatacattgaaaaaggtttcagaagttctttccaggtttgccaaa
gatgggatacctctcttagatcctgaagaggatatgaaagtacagtctaattcatacaga
aaagctgttagaaggatagaagctctagagagtctatttgacagacatgaaatccggaat
tcgccacttatccaacaaaagctgaaagttttgcgtgcgaagcaagaattgactgctaaa
atcaagtcaatcaagaaaacaatgcgtctttccacatcactagccttcaaggatgaactg
aaggcacgaaaacgtgttcttcgtaggctgggatatattaccagtgaagatgttgtagag
ttaaagggaaaggtttcttgtgagatcagctctgctgatgaattaacactaacagagctt
atgtttagtggggtactgaaggatgtgaatgtggaggagatggttgcacttctctcatgt
tttgtgtggcaggagaagctccaggaagcccagaaaccaagggaagagctggacctgctt
ttttctcagctgcaagaaacagcaagaagggttgccaatgttcagcttgagtgcaaggtc
caaattgatgtggagaattttgtgaattcttttcaccctgatatcatggaagcagtgtat
gcatgggcaagaggatccaaattctacgaaatcatggagatcacgcaagtatttgaaggt
agcttaatcagggccattagaaggctggaggaagttctgcaacagctaattttggcatca
aaatccattggagagacccaattggaatcaaaatttgaagaggctgttactaagatcaag
cgtgatatagtatttgcagcatctctgtatttgtag
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