Phoenix dactylifera (date palm): 103722537
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Entry
103722537 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103722537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103722537
03012 Translation factors [BR:
pda03012
]
103722537
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103722537
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103722537
Translation factors [BR:
pda03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103722537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
ATPase
ABC_tran
PhoH
AAA_16
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
103722537
NCBI-ProteinID:
XP_008811383
UniProt:
A0A8B7D2D3
LinkDB
All DBs
Position
9:complement(14809479..14833347)
Genome browser
AA seq
1216 aa
AA seq
DB search
MPYAAVLWGCLRNRPRMTMSLAPSAAALLRSPTAPRKSSSNPTPASMKSHSTGGGVYVPP
IPRLRSVIASANGTLTAARSVDYDWRDAGAGGGQGAITLNPSAPAPAAADGFPPYFRRQS
SHYARYAYDDYSDDDSDRDMEVSPASNKGASTLDNVDEWKWKLSMLLRNGSEQEVVSREK
KDRRDYEQLSALAERMGLYSRQYGRVVVFSKVPLPNYRSDLDDKRPQREVSIPNGLQREV
DHLLGEYLARKRTNRGSFPDIAFSRSSSTDSFTTDEGLPEQQDPQLSTSVVMEKILRRRS
LQLRNQQQAWQESPEGQKMLEFRRSLPAYKEREALLAAISQNQVVVISGETGCGKTTQLP
QYILESEIDAARGATCSIICTQPRRISAISVSERVAAERGEKLGESVGYKVRLEGMKGRD
TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLIL
MSATLNAELFSSYFGGAPMIHIPGFTYAVRTHFLENVLEITGHRLTPYNQIDDYGQEKMW
KMQKQALSKRKSPIASVVEDVLEAADFREYSARTRDSLSCWNPDSIGFNLIESVLCHICR
KERPGAVLVFMTGWDDINSLKDQLQANPLLGDPSKVLLLACHGSMPSAEQRLIFENPNNG
VRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRA
GRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKCLRLGSISEFLSRALQSPE
PLSVKNAIEYLKIIGALDEKEQLTVLGRHLSMLPVEPKLGKMLIFGAIFNCLDPILTVVA
GLSVRDPFLTPFDKKDLAESAKSQFSCRDYSDHLALVRAYEGWKDAEREHSGYEYCWKNF
LSAQTLKAIDSLRKQFLFLLKDTGLVDENFSTCNKWSRDENLVRAVICAGLYPGVCSVVN
KEKSISFKTIEDGQVMLYSNSVNGREAKIPYPWLVFNEKVKVNSVFLRDSTAVPDSVLLL
FGGNISRGGLDGHLKMLGGYLEFFMKPDLASTYLGLKRELEELIQNKLLNPRMDIQTSEE
ILSAIRLLVTEDPCSGRFVFGRQELKPKKPKSLLPTSSGGGGENPKSQLQTLLTRAGHDN
PSYKTKQLKNHQFRATVEFNGMQFVGQPCGSKKLAEKEAASEALEWLIGGATSGSRDTDH
MSMLLKKSKKKHHRRT
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgctgcggtgctgtggggctgcctccggaaccgcccccgcatgaccatgtct
ctggccccctccgctgccgccctcctccgctccccgacggcccctcgaaaatctagctct
aaccccactccggcatcgatgaagagccattccaccggtggcggcgtctatgtcccgcct
atcccccgcctccgctccgtcatcgcctccgctaacggcactctcaccgccgcccgatct
gtcgactacgactggcgcgatgccggcgccggcggcggacagggggccatcaccctcaac
cctagcgccccggcccccgccgctgccgacggattcccgccctacttccggcggcagagc
tcccactacgcgcgatatgcgtacgatgattactctgacgacgactcggatcgcgacatg
gaggtttcgccggcttcgaacaagggtgcctccactctagataatgttgatgagtggaag
tggaaattaagtatgcttctccgcaatggaagcgagcaagaggtggtatcacgagagaaa
aaggacaggcgtgattatgagcagctatctgcactagctgaaagaatgggtttatatagc
cgccaatatggaagggtggttgttttcagcaaggtacctttgccaaactaccgatcagat
cttgatgataaaagacctcagagggaggtctctattcctaatggtttgcaaagagaagtg
gatcatttgcttggagaataccttgctcggaagcgaacaaatcgagggagctttcctgat
attgccttttcaaggtcaagtagcactgacagtttcaccactgatgaaggtctccctgag
caacaggaccctcaattatctactagtgttgtcatggagaaaattctgaggcgaagaagt
ttacaattgcgtaatcaacaacaggcttggcaggaatcaccagaaggacaaaaaatgctt
gaatttcggagaagtctccctgcttataaagaaagagaagcactgttagcagccatatct
caaaatcaggtggttgttatttcaggtgaaacgggttgtggtaagaccacacaacttcct
caatacattttagaatctgagatagatgctgctcgtggagcaacctgtagtatcatttgt
actcaaccaagacgaatatctgctatatctgtatctgaaagagttgcagctgaaagaggg
gagaagttgggtgaatctgttggttataaggttcggctagaaggcatgaaagggagggac
actcgcctacttttctgcacaacaggaattttgttgaggagattactggttgatagaaac
ttgaaaggtgtaacccatgttattgtagatgagattcatgaacgtggcatgaatgaggat
tttcttctgatagtcctgaaagaccttcttccccgtcgtccggaacttaggttgatctta
atgagtgcaacattgaatgctgagcttttctcttcttactttggtggggccccaatgata
cacatccctggtttcacatacgcagtgcgaactcattttctggagaatgttctggaaatt
actggacatagattgactccgtacaatcaaattgatgactatggacaagagaagatgtgg
aaaatgcaaaagcaagcattgagtaagaggaagagcccaattgcttctgtggtggaagat
gtactagaagctgctgattttagggagtatagtgcaagaacccgtgactcactatcttgt
tggaatcctgactctattggctttaacctcatagaaagtgttttgtgccatatttgtcga
aaagaaaggcctggcgcagttttagtgtttatgactgggtgggatgacattaattctttg
aaagatcagcttcaagctaatcctcttcttggagatccttccaaggttctgcttcttgca
tgtcatggttctatgccaagcgcagagcagaggttaatatttgaaaaccccaataatggt
gtgaggaagatagttctcgccactaatatggctgagacaagtatcacaatcaatgatgtg
gtatttgttgtggactgtggaaaggcaaaagagacatcatatgatgcattaaataatacc
ccctgtttgcttccaacatggatctctaaagcttctgctcgccaaagaagaggaagagct
ggtcgtgtccagcctggggagtgttaccatctttatcccagatgtgtatatgatgcattt
gctgattaccaattaccagaacttttaaggacacctttacaatctctttgcttgcaaata
aaatgcctacgtcttggaagcatctccgagtttttatcaagggctttacaatcaccagaa
ccattatcggtgaaaaatgccattgaatatctgaaaattattggggcattagatgagaag
gaacagttaaccgttctaggacgccacttatcaatgctgccagtggagccaaagctggga
aagatgcttatttttggggctatattcaactgtcttgatcctatattgactgtcgttgct
ggtcttagtgtcagagatccatttttaactccatttgacaaaaaagatctagctgaatct
gcaaaatctcaattttcatgccgagactacagtgatcatcttgcactagttcgtgcctat
gagggatggaaggatgccgaaagagaacattctggatatgagtactgctggaagaatttt
ctttctgcacaaacattaaaggctatcgattctcttagaaagcaattcctttttctgctc
aaggataccggtttggtcgatgagaatttcagcacgtgcaataagtggagtcgtgatgag
aaccttgtccgggcggtaatatgtgctggcttgtatcctggagtctgctcagttgtgaac
aaggagaaatcaatatctttcaagacaattgaggatggtcaggtcatgctttactcgaat
tcagtcaatggaagggaggctaagattccatacccatggttagtttttaatgaaaaggtg
aaggttaattcagtattcctacgagactcaacagcagtgcctgattctgtgttgctgctt
tttggtgggaacatctcacgagggggacttgatggacacttgaaaatgttaggtggctac
ttggaatttttcatgaaacctgatttggcatcaacatacttaggcctcaagagagagctt
gaagagctaattcagaacaagcttctaaaccctagaatggacatccagaccagtgaagaa
atcctatcagccatacggttgcttgttacagaggatccatgtagtggccggtttgtcttt
ggtcgtcaggagctcaaacctaagaagccaaaatccttgcttccaaccagctctggaggt
gggggtgaaaaccccaagagccaacttcagacgcttctaactagagctgggcatgacaac
ccaagttataaaacaaagcagctgaagaaccaccagttcagagctacggtcgagttcaat
ggcatgcaatttgttgggcagccatgcggcagcaagaagctagcagagaaggaggcggca
tctgaggcactggagtggctaatcggcggggccacatcaggttctcgtgacaccgatcac
atgtccatgctgcttaaaaagagcaagaagaagcatcacagaaggacataa
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