Phoenix dactylifera (date palm): 103724199
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Entry
103724199 CDS
T03274
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X4
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103724199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103724199
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103724199
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103724199
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
103724199
NCBI-ProteinID:
XP_008813611
UniProt:
A0A8B7D5G0
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Position
14:22443001..22473958
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AA seq
903 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGDLESQIDNFEAEVEGLSVKKGKTRPPRLTHLEMSITRHRA
HIIKLELILRLLDNDELSPDQVNDVRDFLEDYVERNQEDFDEFSDVDELYSTLPLDKVEA
LEDLVSLGPSSLVKGVSSVSVASAALGSKNSAASSPTQAALSSTASQNTAQDQSEETASQ
DSNSDIAPRTPPSKSGAMGSLVSAASPSVSSGTPAGPTSTVASNVSGRPLTGGPTVAAIL
SGPPSARGVTDNSSAATSASITNSSSSVKEDDSMMFPGHRSSPAIPETGIGRGISRGISN
QVPITAPMSLSSASAASGNGALGSVPAVSDLAKRNMLNVGSGNLSQPLVSPLSNRILLHQ
ASKTNDGTNSNDSNSVSEGAVVGGRVFSPSVSGVQWRPPTATFQSQNETGQFRGRPEIAP
DQREKFLLRLQQVQQQGHSPLLGGPHIPGANDRQLSAQQQSVLLQQLNSQSSSISPQVGL
GLGVQGPGLASVSSASQQQATPILQQSSPHPLISTGSKDGDAGHLKVEDQNLQNLSEDLN
IETATSSAFNKTVNDEELKTPYMGAGSSSLTEGNQLPRDTDLSPGQPLQPSQSSASLGVI
GRRSVSDLGAIGDNLGGSAGNSGGMHDQIYNMQMLEAAFYKLPQPKDSERVKSYVPRHPA
VTPPSYPQTQAPIIDNPAFWERLGFDPIGTDTLFFAFYYQQNTYQQYLAARELKRQSWRY
HKKYNTWFQRHEEPKVTNDEYEKGTYVYFDFHIADDGSQHGWCQRIKTEFTFEYNYLEDE
LVV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagccggaaactccagggcgagatcgaccgggtcttgaagaaggtccaggag
ggcgtcgaggttttcgacagcatttggaacaaggtttatgacacggagaacgccaatcag
aaggagaaattcgaagcggatttaaagaaggagatcaagaagctgcagcgatatcgggat
cagatcaagacatggatccagtcgagcgagataaaggacaaaaaggttagtgcctcttat
gagcaggctctcatggatgctcgcaagcttattgagcgtgaaatggaaaggtttaaggtt
tgcgaaaaggaaactaaaacaaaagccttctccaaagaagggttaggccaacaaccaaaa
actgatccaaaagaaaaggctaaatcagagacaagggactggctcaacaatgtggttgga
gatttggaaagtcagattgataactttgaagcggaggttgaagggctttctgtaaagaaa
ggaaaaacaaggccacctcgactgacacatttggagatgtctatcacaaggcatagggct
cacataataaagctggagttgatcttgagactgttagataatgatgagttgagtcctgat
caggtcaatgatgttagagattttcttgaagactatgttgaacgcaatcaggaggatttt
gatgaatttagtgatgtcgatgagctgtacagcactttacctttagacaaagttgaagca
cttgaagatttggtatcacttggtccttctagtcttgttaagggtgtcagttctgtttct
gttgctagtgcagctttaggttcgaagaattctgctgcaagttcccccactcaggctgct
ttgtcatcaactgcatcacaaaatactgctcaagaccaaagtgaagaaacagcttctcag
gacagtaattctgacatcgctcctagaacaccaccttccaaaagtggagccatgggatct
ttggtatcggcagcttcccccagtgtcagttctgggacacctgcaggtcctacttctact
gtcgcttctaatgtttctggacgccccttgactggtgggcctactgttgcagcaatactc
tctggtccaccaagtgctcgaggtgttacagataactcatctgcagctacgtctgcatct
attactaattcatcaagttcagtgaaggaggacgatagcatgatgttccctggtcataga
tcatctccagcaatccctgaaactggaattgggagaggtattagccgagggatatccaat
caagtacccattactgctccaatgagtttaagctcagctagtgctgcttcaggcaatgga
gcacttggttcagttcctgcagtctctgatttggctaagagaaacatgttgaatgttgga
agtggcaatctttcacaaccattagtttctcctctaagtaacagaatcctattgcatcag
gcttcaaaaactaatgatggaactaattcaaatgactctaatagtgttagtgagggtgca
gttgttggtggaagagtcttttcaccttcagttagtggagttcaatggagacctccaact
gcaacttttcagagtcagaatgaaacaggacagtttcggggacggcctgagattgctcct
gaccagagggagaaatttctgctacgactgcaacaagtgcagcaacaaggccacagtccc
cttcttggtggtccacacatacccggtgcgaatgacagacaattatccgcacaacagcaa
agtgtacttttacaacagcttaattcgcaaagctcttctatttcacctcaagtaggtcta
ggacttggtgttcagggaccaggccttgcttctgtttcatcggcctcacaacagcaggca
actccaattctacaacaatcctccccacatcccctgatttcaactggatcaaaagatgga
gatgctggacacctgaaagtagaagaccagaacctgcagaatttgtctgaggatctgaat
attgaaactgctacaagttctgctttcaacaagactgttaatgatgaggagttaaagaca
ccatacatgggcgcaggttcatcatctttgacggaaggtaatcagttacccagagatact
gatctttcacctgggcaaccattgcaacccagtcagtcttcagctagccttggtgtaatt
ggtcgaagaagcgtctcggaccttggtgccattggagataaccttggtggatcagctggg
aattctggtggaatgcacgatcagatctataatatgcagatgcttgaagctgcattttac
aaacttccccagcccaaggactcagaacgtgtaaagagctatgttccgaggcaccctgca
gtgactcctcctagctatcctcaaactcaggctccaatcatagacaatccggccttctgg
gaacgattgggttttgatccaattggcacagacaccttgttctttgcgttttactatcaa
cagaacacttaccagcaatacttagctgcaagggaattgaaaaggcaatcatggagatac
cataagaaatataacacttggtttcaacggcatgaggagccaaaagttacaaatgatgaa
tatgagaagggaacatatgtatactttgatttccatattgccgatgatggttcccagcac
ggatggtgccaaaggattaagactgagttcacatttgaatataattatcttgaggatgag
cttgttgtatag
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