Phoenix dactylifera (date palm): 103724256
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Entry
103724256 CDS
T03274
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103724256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103724256
03019 Messenger RNA biogenesis [BR:
pda03019
]
103724256
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103724256
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103724256
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103724256
NCBI-ProteinID:
XP_008813677
UniProt:
A0A8B7D5J0
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MEMESSRRSAMDRSREPGLKRPRLVEEDRAVASRDRPFAPPRAGGQPLAPRLRAGSERER
DAREEMIRGGSNQQQQELVAQYKTALAELTFNSKPIITNLTIIAGENLHAAKGIAAAICA
NVLEVPSEQRLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCRAYKQVDSSVHPSMRHLFG
TWKGVFPSAPLQIIEKELGFSPIVNGSSGAAKSRPDSPTQRPPQSIHVNPKYLEARQRLQ
HSTRVSKAKEIINDDINRAVSSIDDAERSDKAAVIGSTRQWTNPPSKMPNLRPHRVLINN
PIHEKKEFRGHEFSSDVPVQSDLGVERVSKRLKERDGLDKPYHGAGINASEMHVSSGVFD
VNHAYRVCRSSGSAHLDNQLPSVQDRSIQRTSNNWKNSEEEEYMWDDMNSRAIDNASNNS
LIKGGWSTNDENKSANLQKGKLMPLESKHLSSHLNKIDSLSLLMKTAGREGRVPLLEELE
EHLQQPHAKHDTDCGIGMETSADSLYMGRDPLEHPTSSIWAPLDMPHSMIGLNHTSSRIS
SQSEGQPISFRGGLSTSMSSSLVPGSTGMSGQLRQQQSQPPSPSAHSPPSSALLQHQKSH
NSIDSDLLPSNSFFPIGQKPMHLPERLSQAPDTPVTQDSFPISAQSHPHHSHSPLTSKTP
PSYPSQHLQNSSASGSSAPFAQLRHHLRFLQQPEPNLSVQETQIQSQTSHQIKKSPPLSL
SFGSHQIGLPGKNNSDNAAVEISDQPSTSNLLAAIMKSGLLPNHTMNNFQNLNMQPPLPS
GSPPIQVVTSSDPSVTPASISPLLSHDNALMLPSMRAVLPPLPPGPLPPSLVHTDRETSN
LAISTTNPLSRLLSSLVAKGLISSPATDLPAATSVQLPNKLGNQSSAFASSTSEQKLSNL
DISTIRSLAAKEPSGTEDIAPTSAALLPSTVTLKDLLGIEFKPEIIRKFHPEVISSLFDD
LEHQCNICGLRFRLQAQLNSHLDWHGLKKCELSSFNRVSRKWYVSLTSWVTGYVGPQCGP
LESATSVEKIVLMDKQYEPAVPADESQCICALCGEPFEDIYSAERVEWMYKGAVYLNLTN
RQGDMDFMDESAGHVPIVHAKCMSKSSADDMEAALD
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagctcccgcagatccgccatggaccgctcccgagagccgggcttgaag
agacctcgattggtggaggaggaccgcgccgttgccagccgagatcgcccgtttgccccg
ccgagggctggcggccagccgctggccccgaggctgagggccggcagcgagagggagagg
gacgcaagggaggaaatgatcaggggaggatcgaatcagcagcagcaagagctcgtggca
cagtacaagacggcgctggccgagctgacgttcaattcgaagcctattattacgaatcta
acaatcatagccggagagaatctccacgctgccaagggaatcgctgccgcaatctgcgcc
aatgttctcgaggttcccagtgaacagaggttgccatccctgtatctccttgatagtata
gtgaagaatattggaagagattacattaaatattttgctgcaagactgcctgaggtgttt
tgcagggcctacaaacaggttgattcttctgtacatcctagtatgcgacatctttttgga
acgtggaaaggagtcttcccctctgctccacttcagataattgagaaagaacttggcttc
tcacctattgtcaatggttcatctggagctgcaaaatcaaggccggattctccaacacag
cgtccgccccaaagtatccatgtgaatccaaaatatttagaagcaagacagcgccttcaa
cactcaactagggtaagcaaagcaaaggaaataatcaatgatgacatcaatcgtgcggtt
agttctattgatgatgcagagaggtctgacaaagcagcagttattggaagcacaagacaa
tggacaaatccgcctagcaaaatgcctaatctgcggcctcatagggtactgataaacaat
cccattcatgagaaaaaagaattcagaggccatgagttttcttctgatgttccagtgcag
tcggaccttggagttgaaagggtaagcaagagacttaaagagcgagatggacttgacaaa
ccatatcatggtgctggcataaatgcttctgagatgcatgtcagcagtggtgttttcgat
gttaatcatgcttatagagtatgccgttcatctggatctgcacacttagataatcagctg
ccttcagttcaggatagaagcatccaacgaacatctaataactggaagaattctgaggag
gaagaatatatgtgggatgatatgaattctagagcaatagataatgcaagcaataatagc
ctaataaaaggtgggtggagtactaatgatgaaaataaatctgcaaatttgcaaaaaggc
aagttgatgcctctagagagcaagcatctatcctctcatctaaacaaaattgactcccta
tctctattgatgaagactgctggacgggaaggcagagttccactacttgaggaactggaa
gagcaccttcagcagccccatgccaagcatgatactgactgcggaataggtatggaaact
tcagcagattcactatacatggggcgagatcctttggagcatcctacatcctccatttgg
gccccacttgacatgccacactcaatgattggattgaaccatacaagctcaagaatttct
agtcagtctgaaggacagccaatttcttttaggggtggtttatctacaagcatgagttca
tctttagttccaggatcaactggaatgtcaggtcagctaagacagcaacagtcgcagcct
ccatcaccatctgcacattcacctccatcttctgcactccttcaacatcagaaatcacac
aattcaattgactctgatcttcttccatctaattccttctttcccataggtcaaaaacct
atgcatcttccagaacggttgagtcaagcacctgatacaccagtaactcaggattctttt
cctatttcggctcaaagtcatcctcatcattctcattctccattaacctcaaagacacct
ccatcatatccttctcaacacctgcaaaactcatctgcttctggttcttcggcacctttt
gctcagcttaggcatcatcttcgcttcttgcagcaaccagagcctaatctatcagtgcaa
gagacacaaattcagtctcaaacttcccatcagatcaagaaatcaccacctctatccctg
agttttggatctcatcagataggacttcctggaaagaacaactcagataatgctgctgtt
gaaatctcggaccaacccagtacaagtaatttattggctgctattatgaagagtggactc
ttacccaaccacacaatgaataatttccagaacctgaacatgcagcctcccctacctagc
gggtctcctcctattcaagttgtgacatcatctgatccttctgtcactcctgcatcaata
tcacctctgttgtcccatgacaatgctctgatgctgccctctatgagagctgtgcttcct
cccctaccacctggcccactgcctccatccttggtgcataccgacagggagacctccaat
ttagctatttccactacaaatccactttcaagacttctgagctcattagttgcaaaaggt
ttgatatcttcaccagcaacagatttgccagctgcaacctcagttcagctgcctaacaaa
ctagggaatcagagtagtgcctttgctagcagcacctcggagcaaaaactttcaaactta
gatatctcaaccattcgttcactagcagcgaaagagccttctggcactgaagacattgct
ccaacaagtgcagctttgttaccatccactgtaacattgaaggaccttttaggcatcgag
ttcaagccagaaatcatacgcaaatttcatcctgaggtgatcagtagcctctttgatgac
ctagagcatcaatgcaacatatgtggcctaagattcagacttcaagcacagctcaatagt
cacttggattggcatggcctgaagaagtgtgaactgagcagtttcaacagagtttctcga
aaatggtatgtgagtttgactagttgggtcactggatatgtgggaccacaatgtgggcca
ttggagtcagccacttctgtggagaagattgtcctaatggacaagcagtatgagccagca
gttcctgcagatgaaagccagtgcatatgtgcactatgtggagaaccatttgaggacatt
tattctgctgaaagggttgaatggatgtataaaggagcagtatatttaaatctaacaaat
aggcaaggtgatatggatttcatggatgagtctgctggacatgttcccattgtgcatgct
aagtgtatgtcgaaaagctcagctgatgacatggaggctgcattggactag
DBGET
integrated database retrieval system
