Phoenix dactylifera (date palm): 120111278
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Entry
120111278 CDS
T03274
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pda
Phoenix dactylifera (date palm)
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pda03009
]
120111278
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
120111278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML
Beta-prop_IP5PC_F
ANAPC4_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_CAF1B_HIR1
Beta-prop_NOL10_N
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_VPS8
PEP5_VPS11_N
Nucleoporin_N
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
120111278
NCBI-ProteinID:
XP_038983774
UniProt:
A0A8B9AKF6
LinkDB
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Position
1:24147510..24148739
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AA seq
409 aa
AA seq
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MASFWREVILTSSPDKPITAHDPLTGTLLAHFSGSRPPRKGLALAGNTLIAASHISAAAA
GFIRLYNWWSSAALHCIQAPEPVAPLAATPDGSYLFSGGLSGCIHAFSLPSGDLCRSFRA
HRQAVSCLVINDDGSLLISGGDDGTIAIFPILRLLDDASNEEDPAQLALNQFSAHGSSVT
GIAAGPGGCNATVVSSSLDCTCKLWSLADGVKLRTVQFLCAIWCVAVDPTSSEFYAGGSD
GRIYVVPLRVGGRKLRDAGAEVTAWESERNGAVMAVAMAHGHQNLISASEDGIIRIWDVE
SRSVVRIIGLAGGALSDLIVVKGINAINGARKGDEVVSNGRFCEREMGRNVNELRDVDEC
LSVAVKDRSRAIDKLEAVIDIYKRLLGLLLKEAKRENGKEEANKTDYFT
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcatccttctggagagaggtcatcctcactagctcccccgacaagcccatcacagcc
cacgaccctctcaccggcaccctgcttgcccacttctccggcagccgcccccctcgcaaa
gggctcgccctcgctggcaacaccctcattgccgcctcgcacatttcagccgctgctgca
ggctttattaggctctacaactggtggtcctccgccgctctccactgcatccaagccccc
gaaccagtagctccccttgctgcgactccagacggctcctaccttttctctgggggcctc
tctggctgcatccatgccttctctcttccctccggtgatctgtgccgctcgtttcgggca
caccgccaggctgtgtcgtgtctcgtcatcaacgacgatggctctctactaatatcgggc
ggtgatgatggcaccatagcaatattcccaatccttcgacttctagatgatgcctccaat
gaagaggatcctgcccaacttgcattgaaccaattctctgcgcatggctcgtcggtgaca
ggcatcgctgcagggccaggcggatgcaatgctactgtagtttcaagctcgcttgattgc
acttgtaagctttggagcctggcagatggtgtcaagctgcgaactgtgcaattcctgtgc
gcaatttggtgtgttgctgtggatcctactagttctgagttctatgctggtggatcagat
gggaggatatatgttgtaccactaagagtaggaggaagaaagctacgagatgctggagca
gaggttacagcatgggaatcagagcggaatggagcagtgatggcagtggcaatggcacac
gggcatcagaacttgatatcagcttccgaagatgggatcataaggatttgggatgtagag
agcagatcggtggttcggattattggacttgcggggggtgcccttagcgatcttatagtg
gtgaaagggatcaatgcgatcaatggagctcgaaagggagatgaagtcgtgtccaatggg
cggttttgtgagagggagatgggtagaaatgttaatgagctgagagatgtggatgaatgc
ttgagtgtagcagtgaaggacaggagtagggccattgacaagcttgaggctgtgatagac
atctacaagaggctcttgggtctccttctcaaagaagccaagagagaaaatggtaaagag
gaagccaacaagacggactactttacgtaa
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