KEGG   Phoenix dactylifera (date palm): 120111340
Entry
120111340         CDS       T03274                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03018  RNA degradation
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120111340
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120111340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    120111340
   03041 Spliceosome [BR:pda03041]
    120111340
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120111340
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120111340
Spliceosome [BR:pda03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120111340
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 120111340
NCBI-ProteinID: XP_038984132
UniProt: A0A8B9AED1
LinkDB
Position
7:8618353..8622010
AA seq 111 aa
MLFSSKCFCHLFQSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAI
EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPEGA
NT seq 336 nt   +upstreamnt  +downstreamnt
atgttgttctcatcaaaatgcttttgtcatctattccagtcaggccgaaaggagaccgtt
ttagatttggcaaagtttgttgacaagggggtccaggtcaagctaactggagggagacaa
gtaacaggaactttgaaaggatacgatcagctgctaaacttggttcttgatgaagcaata
gagttccttagagatcctgatgacccactgaaaacaacggaccaaaccagacgacttggc
ctaatagtttgtaggggaactgcggtaatgcttgtatcgccaactgatggaactgatgag
attgctaacccctttcttcagccagagggggcctaa

DBGET integrated database retrieval system