Phoenix dactylifera (date palm): 120111340
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Entry
120111340 CDS
T03274
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120111340
09123 Folding, sorting and degradation
03018 RNA degradation
120111340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
120111340
03041 Spliceosome [BR:
pda03041
]
120111340
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120111340
mRNA degradation factors
5'-3' decay
Lsm complex
120111340
Spliceosome [BR:
pda03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120111340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
120111340
NCBI-ProteinID:
XP_038984132
UniProt:
A0A8B9AED1
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Position
7:8618353..8622010
Genome browser
AA seq
111 aa
AA seq
DB search
MLFSSKCFCHLFQSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAI
EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPEGA
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atgttgttctcatcaaaatgcttttgtcatctattccagtcaggccgaaaggagaccgtt
ttagatttggcaaagtttgttgacaagggggtccaggtcaagctaactggagggagacaa
gtaacaggaactttgaaaggatacgatcagctgctaaacttggttcttgatgaagcaata
gagttccttagagatcctgatgacccactgaaaacaacggaccaaaccagacgacttggc
ctaatagtttgtaggggaactgcggtaatgcttgtatcgccaactgatggaactgatgag
attgctaacccctttcttcagccagagggggcctaa
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