Paramisgurnus dabryanus (large-scale loach): 135717955
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Entry
135717955 CDS
T10799
Symbol
col18a1b
Name
(RefSeq) uncharacterized protein col18a1b
KO
K06823
collagen type XVIII alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pdab04147
]
135717955 (col18a1b)
00535 Proteoglycans [BR:
pdab00535
]
135717955 (col18a1b)
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135717955 (col18a1b)
Exosome [BR:
pdab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135717955 (col18a1b)
Proteoglycans [BR:
pdab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135717955 (col18a1b)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135717955 (col18a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
135717955
NCBI-ProteinID:
XP_065096363
LinkDB
All DBs
Position
7:complement(11470207..11597763)
Genome browser
AA seq
1530 aa
AA seq
DB search
MRIRQGLYFLLILNVALFNAWLWNSPAVTDALEVIEEYSGRDETSKDNNISASNIQDFVE
NWDQNQAVNWNKAGTARTPGISEKLGHFKTEENGISLLQLFENLPEEITQVPGPNGETGY
LFNKETNMEQMARAHLPRTFYRDFSLVFHLKPTSKDAGVIFSITDANQLIMYVGVKLSAV
ENGERKVIFYYTEPDSDVSREVARFEVPHQPDKWSRFSLAVNMDQLSFYGDCESNAKVIK
FKRLPDDVELEANSKIFVGQGGGADPDKFQGVISELKVFGNPWAAEYHCDEPAAAFDGSG
DNGSGIEDITQTEHSLGSVFQPLPPPPVSTTKSKPKTDIDAPQKETGVSTGKKKNGENGD
KGDQGYTGLKGDLAGDTLSSLSSVGGTCGKEVQFLLFNCFRIKYGTKKFTGGDPGWVGLG
GEGVLGSGVVGKGRGRGVRAGFVGEADLVEDQADKHDDRVSTGKKKNGENGDKGDQGYTG
LKGDLAGDTLSSLSSVGGTCGKEVQFLLFNCFRIKYGTKKFTGGDPGWVGLGGEGVLGSG
VVGKGRGRGVRAGFVGEADLVEDQADKHDDRVSTGKKKNGENGDKGDQGYTGLKGDLAGD
TLSSLSSVGGTCGKEGSQGEKGMKESTGSEYLGPKGDRGPPGPPGPPGPQGPVIELINTG
DKIVEKVQGQMGPPGPPGPEGPPGPQGPEGRCGPQGISGGRGPKGQKGEKGEGQPGPRGP
PGHPGPSISDRTTFVDMEGSGYLPGLRGPPGPPGPPGPPGPGEESGFNGAGPTGPPGLNR
HPGRPGPPGRPGNPGAPGPPGQKGSQGSAGILGKEGLPGLPGPMGPQGPPGPPGPAFRIT
ADGKEEIALNYIPGVMGPPGPQGPQGIPGLPGKAGIPGIPGQKGDEGLRGQDGFPGLDGF
SGAIGLKGERGWKGNKGEPGHFGGPPGPPGPPGPPCQIVCTNSSSPPGIAGQAGFPGPMG
PKGIRGAPGPPGNSVKGEKGEPGLNYDSTDIPIHTCGLPGQPGDPGAPGPEGQIGPVGPP
GPKGEIGIPGRPGRPGLNGKKGVKGDSGVERYGYGNPGPPGPPGPPGPPGSVDRYNNEMK
GEVGPKGEKGEPGGGFHNHYGGVQGPPGRPGLPGPKGESITGPPGPPGPQGIGYDGRPGS
PGPPGPPGPPGSSLPGAYRPSQTINIPGPPGPPGPPGPLSGLFSQVLVLTTFDMMAATTR
QHLEGTLIYVKENRDLYMRVDDGVRQIMLGEYSPFPKVLDNSVASVKTPLVVHYTHDYPT
ISPPQAPPPPEAKYPVLPNPRYHGLTDPADPRHYDPQYSSSADPIHQGYPDPRHHPHSSH
PHHSGHPDSSYHSISILHRRPFIKETQLPAHTHTSGPGLHLIALNSPHVGDMQGIKGVDH
QCFLEAQAIGVKGTFRAFLSSRLQDLYSIVQKNDRDQLPIVNLKDEVLFSDWESIFSDSE
GRMTDNTHIYSFDGRDVLKDNAWPEKMVWHGSSTRGHRQTDSYCETWRTNSYAATGLASS
LQDGYLLQQLPRSCSSSFVVLCIENRYIAK
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcagacagggcttgtacttcctgttgattctgaatgtggcacttttcaatgcc
tggttgtggaatagtccggctgtgacagacgccctagaagtgattgaagaatattctggc
agggacgaaaccagtaaggacaacaacatttctgccagcaacatccaggattttgttgag
aactgggaccagaaccaagctgtgaattggaataaagctggcacagcgaggacacctggc
atctctgagaagcttggtcatttcaaaacggaagaaaatggaatctccctgctacaactt
tttgaaaacctacctgaagagatcacccaggtgcccggaccaaatggtgaaactggatac
ctttttaataaggaaaccaacatggaacagatggcacgtgcccacctacccagaaccttt
tacagagacttctccctggtcttccatttaaagcctacctccaaagatgctggagtgatt
ttttccataaccgatgcaaatcaactaatcatgtatgtaggggtcaagctctcagctgtg
gagaacggagaaaggaaagttattttttattacacagagcctgattcagatgtatctcga
gaggtggccagatttgaggtgccacatcagcctgataagtggagccgtttctctctggct
gttaacatggatcaattgtctttctatggggactgcgaatctaatgccaaggtgatcaag
tttaaacgcttacctgatgatgtggagctcgaggcaaactctaagatctttgtgggacag
ggtggaggtgctgaccctgacaaatttcagggtgtaatctcagagttaaaggtgtttgga
aatccatgggctgctgagtatcattgtgatgaacctgctgctgcctttgatggttccggg
gacaatggaagtggaatagaggacataactcagacagagcacagtctaggctcagttttt
cagcccctgcctccacctcctgtttctacgacaaaaagtaagcctaagacggacatagat
gctcctcagaaagagacaggagtatctactggtaaaaaaaagaatggtgaaaatggggac
aaaggagaccagggctatactgggctaaagggtgacttggctggtgatactttatcttca
ctctctagcgtaggtggaacctgtggaaaggaggtgcagtttctgctctttaattgtttc
agaatcaaatatggaacaaaaaagttcacaggtggtgatccaggctgggtgggactggga
ggggaaggagtcttaggttcaggggtagtaggtaagggccgagggcgaggagtacgggcg
ggctttgtgggggaggcagatttggtagaggaccaggcagacaaacatgacgacagagta
tctactggtaaaaaaaagaatggtgaaaatggggacaaaggagaccagggctatactggg
ctaaagggtgacttggctggtgatactttatcttcactctctagcgtaggtggaacctgt
ggaaaggaggtgcagtttctgctctttaattgtttcagaatcaaatatggaacaaaaaag
ttcacaggtggtgatccaggctgggtgggactgggaggggaaggagtcttaggttcaggg
gtagtaggtaagggccgagggcgaggagtacgggcgggctttgtgggggaggcagatttg
gtagaggaccaggcagacaaacatgacgacagagtatctactggtaaaaaaaagaatggt
gaaaatggggacaaaggagaccagggctatactgggctaaagggtgacttggctggtgat
actttatcttcactctctagcgtaggtggaacctgtggaaaggagggtagtcaaggagag
aaaggaatgaaggaaagtactgggtctgaatatcttggccccaaaggtgatcgtgggccc
ccaggaccacctggaccgccaggtcctcaggggccagtaatagaattgataaacactggg
gacaaaatagtagagaaggtgcagggtcaaatgggcccacctggaccaccaggaccagag
ggtccacctggtccacagggccctgaaggacgttgtggtcctcaaggaatatctggtggt
agaggccctaaaggacagaagggagagaaaggtgaaggacaaccaggccctcgaggtcca
cctgggcaccctggaccctcaatctcagacaggactacctttgtggacatggagggttct
ggatacctgccgggtcttcgtggtcctcctggtccacctgggcctccagggcccccagga
cctggtgaagaatcaggatttaatggagctggtcctactggtccccctggactaaatagg
caccctggacgccctgggcctccaggtcgacctggaaatcctggtgctcctgggccccca
ggccagaagggttcacagggttctgcaggaatcttgggaaaggaagggctgcctgggctt
cctgggcctatgggacctcagggacctccaggacctcctggaccagccttccgaattact
gctgatggaaaagaagaaattgctcttaattacattccaggggttatgggtccaccaggt
ccacagggacctcagggcatacctggactaccaggcaaagctggtatcccaggtatccca
ggtcagaaaggtgatgaagggctaagaggacaagatggattcccagggttagatggtttc
tctggagcaatagggctaaagggggaaagaggatggaaaggtaacaaaggtgagcctggt
catttcggaggacctcctggacctcccgggccaccaggtcctccatgtcaaattgtctgt
actaattccagtagtccacctggtatagctggtcaagcaggattccctggaccaatggga
ccaaaaggaatacgaggggcacctggaccaccaggaaactctgtcaagggagagaagggt
gagcccggactgaattatgactccaccgatatccccattcatacttgtggactacctgga
cagccgggtgatccgggagctccaggaccagaaggacaaataggaccagttgggccacct
ggacctaaaggtgaaataggaatcccaggtagacctggtcgacccggactgaatggcaaa
aaaggggtgaaaggcgattcaggtgtcgaaagatatggatatggcaacccgggacctcct
gggcctcccgggccccctggacctccaggctctgtggacagatataataatgagatgaaa
ggggaggtgggacctaaaggagagaagggagaaccaggtggaggttttcacaatcattat
ggtggagtacagggtccaccaggaaggcctggactgcctggtccaaaaggagaatctatt
actggacctccaggcccccctggaccccaaggaataggttatgatggtcgcccaggtagt
cctggcccaccgggtccacctggaccaccaggttcatccctgccaggtgcatacagaccc
tcacaaacaatcaatatccctgggcctcccggtccccccggaccacctggaccattatct
gggttattttctcaggttttagttttgacgactttcgacatgatggctgccaccactcgc
cagcatctagaaggcacactgatctatgtgaaagagaacagagacctttatatgagagta
gatgatggcgtcagacaaatcatgctaggagaatatagtccttttcccaaggttctggat
aactctgtggcttcagtcaagactcctttggttgttcattacactcatgattaccccaca
atctctccaccacaagcccctcctccacctgaagccaagtaccctgtgttgcccaatccc
agataccatggactgacagatccagctgatcccagacactatgatccacaatactcttct
tcagctgacccaattcatcagggctatcctgatccgaggcaccaccctcacagcagccac
ccacatcactctggccatcctgacagcagctatcatagtattagtattctccaccgtagg
cctttcattaaagagactcagcttccagcccacacacacacatccggccctgggctgcac
ctaattgccctcaactcacctcatgtgggtgacatgcagggtataaaaggtgttgaccac
cagtgctttttagaagcccaagccattggggtcaaaggaactttcagggcattcctgtca
tcacggttacaggatctgtacagtattgttcaaaagaatgacagggatcagcttcctata
gtaaatcttaaagatgaagtattattcagtgattgggagtctatctttagtgactcggag
ggcagaatgaccgataacacacacatctattcatttgacggtcgagatgttctcaaagac
aatgcctggccagaaaagatggtatggcatggatcaagcactcgtgggcacaggcagacg
gacagttactgtgagacatggagaaccaatagttatgctgccactggcttagcttcttct
ctccaagatggctacctgcttcagcagttaccgcgcagctgcagcagctcttttgttgta
ctgtgcattgagaacagatacattgctaagtaa
DBGET
integrated database retrieval system
