Paramisgurnus dabryanus (large-scale loach): 135718244
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Entry
135718244 CDS
T10799
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135718244 (chd1)
03036 Chromosome and associated proteins [BR:
pdab03036
]
135718244 (chd1)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135718244 (chd1)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
135718244 (chd1)
SLIK complex
135718244 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
135718244
NCBI-ProteinID:
XP_065096609
LinkDB
All DBs
Position
10:complement(28780598..28811342)
Genome browser
AA seq
1799 aa
AA seq
DB search
MDGRSEDESASNSSGESSNSDDESKSGSGSGSSSSSSSSSSSQSGSSESGSGSDSGSQSD
SDSEKSKEKNNQENKIDGAAFWKSNPSILTVQRSAMLRKQQLQQQQLHHPPQSSSNSGSD
EDSSSSDDSDDDSKSKSKGSGSDSDSGSDSGSGSSSASSAEEGNSEESMSDYEPSLKVKS
RKPPNKSNARNGKKSKASKKPSRSSSDDDDDYKKALAGPRRQATVNVSYKEDEELKTDSD
DLVEVCGEDVPPPEEDEYETLERVMEMRIGQKGVTGAITTVYAVEADGDPNANFDPSRQS
GEVQYLIKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKEQDRKKWLKTASPEDVEY
LNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLSYSECSWEDGALIARKF
QKCITEYMSRNQCKNIPSRDCKVLKQRPRFVPMKKQPTYICVEGLELRDYQLDGLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYLFNEHQLYGPFLLVVPLSTLTSWQREIQLWAS
QMNVVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGNVSWAFIGVD
EAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWELFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEENEFYNRQEGLQHLIRSSGKLVLLD
KLLVRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT
KGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPFNKEELSAILKFGAE
ELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMDDEEIDM
DTDRNNRNWDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQISFNGNESRRSRNRL
RYSGSDSDSGTDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIAR
DAELVDKSEHDLRRLAETVHNGCLKTLKENPCGPERTSGGRRGKVKGPTFRISGVQVNAK
LVISHEEELAPLHKAIPADAEERKRYMIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGS
WEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGSANSR
KRKPRGKKNKAVKPKVDELMNSLSSAPPSDKSSEDEDEKEDEEKETALVKLPSRRARVTE
RPVEEEEEEDEEDESEEEEPEIKEEEEEEEEEIKEKVVKKEIKKEKKEEGRDSKEKEPKE
KEIKQEPVLEEEEEEEETPIEAVEVKAEVREKKADTPVIVPTVGESILSSEESEELDQKT
FSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLREYTNPEHIKQ
WRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENVQAVEQNTSTVNTQSAKHSDIERIKE
SQHDDSSRDSSSSDRHHTSRYHEHNKERNPSDSYRKNTDSRKRPYPSFSNGKDHRERERD
HYRERGERQDSRYYSDSKHRKLDDHRSSRDHRSDSTSKDSRTHSDHRSHSEHRSGTDYAH
HKSSRDYRYHSDWQMEHRVSGSGQRSPREQRSPYDSRSPFEYSSDHKSTPEQVWSSRKT
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atggatggacgtagtgaagatgaaagtgccagtaacagcagtggagagtcaagtaactcg
gatgatgagtccaagtcagggtcgggatctggctccagttcgagcagtagcagttccagc
agtagccaatcaggaagcagtgaatcaggaagtggctcagattctggcagccaatcagac
tctgactctgagaagtccaaggaaaagaataatcaagaaaacaagattgatggagcagcg
ttttggaagtccaaccccagtatcctgacagtgcagaggtcggccatgctcaggaaacaa
cagttacaacaacaacagctccatcatccacctcagagctcatccaacagcggttcagat
gaggactcttctagtagtgatgactcggacgatgactcaaagagcaagagtaaagggtct
ggatcagattctgattcgggttcagactcgggttcaggaagctcatctgcctcctcagca
gaggaagggaacagtgaagagtctatgtccgactacgagcccagtctcaaagtcaaaagc
aggaaacctccaaacaagtccaatgccaggaatggcaaaaagagtaaagcgtcaaagaag
ccctcccgatcctcctccgatgatgacgatgattataagaaagctcttgcaggccctcgg
cgtcaggccacggtcaatgtcagctacaaagaagatgaggaactgaagaccgattcagat
gacctggtggaggtgtgcggggaggatgtgccaccaccagaggaggacgaatatgagacg
ctggagagggtgatggaaatgaggataggacagaaaggagtgacgggggctataaccaca
gtttacgctgtcgaggcagacggcgaccccaacgccaactttgaccccagccgacagtca
ggagaggtgcaatacttgattaaatggaagaactggtctcacattcacaacacctgggag
acagaggaaaccctcaagcaacaaaacgtgaagggcatgaagaaactagacaacttcaag
aaaaaagagcaagacaggaaaaaatggttaaaaactgcttcacctgaggatgtggagtac
ctcaactgtcagcaggaattgatggatgacctgcattcacaatatcaactggtggaacga
atcattggacattcaaatcagaagtcggccgccggctatccagactacctgtgtaaatgg
cagggtctgtcgtactccgagtgcagctgggaagacggagcgctcatcgcgcgaaagttt
caaaagtgcattactgaatacatgagccgaaaccagtgcaaaaacattccctccagagac
tgcaaggttttaaaacagagaccacggtttgtgcccatgaagaaacagcctacctatatc
tgtgtagaaggtctggagctgcgggactatcagttggacggtttgaactggatggcccat
tcctggtgcaaagggaacagttgtatcctagctgatgagatgggtcttggtaaaaccatc
cagaccatcagcttcctcaattatctgttcaatgagcaccagctatatgggcctttcctc
ctggtagtgcctctatccacacttacatcctggcagagagagatccagctctgggcttcc
caaatgaacgttgttgtctacctcggtgacataaacagcagaaacatgatccggacacat
gaatggatgcatccacagacgaagcgcttaaagttcaacatcctgctcactacttatgaa
attctgctcaaagataagtcatttttaggtaatgtgagctgggcgttcattggtgtagat
gaggctcatcgactgaagaatgatgactctcttctctataagaccatgatagactttaag
tccaatcacaggctgctaatcacaggcacacctctgcaaaactccctgaaagagctgtgg
tcccttctgcatttcatcatgccagagaagtttcactcatgggagttgtttgaagaggaa
catggaaagggcagagactcgggctacaccagccttcataaagagctggagccctttctg
ctgcgtagagtaaagaaggacgtagagaaatctctgcccgctaaggtggagcagatcctc
agggttgagatgagcgctattcaaaaacaatactacaagtggatattgacgaggaactat
aaagctctgagtaaaggcactaagggaagcacatctggctttctaaacatcatgatggag
ctgaagaaatgctgtaaccactgctacctcatcaaaccacctgaggagaacgagttctac
aacagacaagagggacttcagcacctgattcgtagcagtgggaagctggttcttttagat
aaactactggttcggttgaaggaacgaggtcaccgtgtgctcatcttctcccaaatggtt
aggatgctggacatccttgccgaatatctgaaaagcaggcagttcttgtttcagagactg
gacggttctataaagggtgagatgaggaaacaggcgctggatcattttaatgctgagggc
tcagaggatttctgcttcctgctgtctacacgagcaggtggtctgggcattaatctggcc
tctgctgatacggtggtgatttttgactccgactggaacccgcagaatgacctacaggcc
caggccagagctcataggattggacagaagaaacaggtaaatatataccgtctagtaaca
aagggctcagttgaggaggagattatcgagagggccaagaagaaaatggtgttagaccat
ctagttattcagagaatggacactacagggaagactgttctccacacgggcgctgctcct
tccagttccactccgttcaacaaggaggagctgtctgctatcctgaagtttggtgcagag
gagctctttaaagaaccggagggagaagagcaagaacctcaggaaatggatattgatgaa
atcctgaaaagagcagagaccagagagaacgaccctggaccatcaactgtaggagaagag
ctcctctcacagtttaaggtagcaaacttttcaatgatggacgatgaggaaattgacatg
gacacagatagaaacaataggaactgggatgatattatccctgaggagcaaaggaggaga
ctggaggaggaggagcgacaaaaggagctagcagagatctatttactgccccgcatgagg
aaatgtgctaaacagatcagctttaatggaaatgagagcaggcggagtcggaacaggctc
agatactctggttcagacagcgactcgggtactgacaggaaacggcccaagaaacgtgga
agacctcgaaccattccaagagaaaacattaagggcttcactgatgctgagatacgcagg
tttatcaagagttataagaaattcggtggccctttagaaagactcgatgctatcgcccgc
gatgccgagctggtggataaatctgagcatgatctgcggcggctggctgaaactgtccac
aacggctgtctgaaaaccctgaaggagaatccctgtggaccggagagaacctcaggaggc
aggcgaggcaaggtgaaaggaccaacttttaggatctcaggggttcaggtcaatgccaaa
cttgtgatctctcacgaggaggagttggcacctctacacaaggccattcctgcagacgca
gaggagaggaagaggtatatgatcccatgccactcaaaggcagctcattttgacattgag
tggggtaaagaggatgactccagtctgctcattggcatctatgaatatggttatggtagc
tgggaaatgatcaagatggacccagatctcaacctcacacataagctccttccagacgat
cctgacaagaagccacaggccaaacagctgcagacacgagctgactacctcatcaagtta
ttgagcaaagacctggccaagaaagaagcacagaaacaggctggcagtgcaaattcacgt
aaaaggaaaccacgggggaagaaaaataaagcagtgaaaccaaaggttgatgaactgatg
aacagtttatcctcagctcctccttcagataagagctctgaggatgaggacgagaaagag
gatgaggaaaaggaaactgctctagtgaaactgcctagcagaagagcacgtgtcacagag
cgaccggtagaggaggaggaggaggaggatgaggaagatgagtctgaggaggaggagcct
gagattaaggaggaggaagaggaggaggaagaagagataaaggagaaggtggtcaaaaaa
gaaataaaaaaagagaagaaagaggagggccgtgacagcaaagaaaaagaaccaaaagaa
aaggaaatcaagcaagaacctgtactagaagaagaagaagaagaagaagagactcctata
gaggccgtagaggtgaaagcagaagttcgggagaagaaagcagatactcctgtgattgta
cccacagtaggagagagtattttatcatctgaagagtctgaagaactcgaccagaaaacc
ttcagcgtgtgtaaggaacgcatgagaccggtaaaggcagcactaaagcagttggatcgt
ccagagaaaggcctgtctgagcgagagcagctggagcatacacgccaatgcctgatcaaa
ataggagatcacattacagagtgtctcagagaatacacaaaccctgagcacatcaaacag
tggaggaaaaatctttggatatttgtttctaaatttacggaattcgatgcaagaaaactg
cataaactctataaacacgcaatcaagaagagacaagaaaatgttcaggcagtggaacag
aacactagcactgtaaatacacaaagcgctaaacattcagatatcgagcggataaaagag
tcgcagcacgatgacagcagcagagacagcagcagctctgacagacatcacacatctcgc
taccacgaacacaacaaagaacgtaacccttcagactcgtacaggaaaaatacagactcc
cgaaagaggccgtacccctccttcagcaatggcaaagaccaccgagagcgagaaagagac
cactacagagaaagaggagagcggcaggacagcagatattacagtgacagcaagcaccga
aagttagacgaccatcgctccagcagagatcaccggtcagacagcacttcaaaggactcg
aggacgcactccgatcaccgttcccattccgagcaccgatctggcactgactacgctcac
cacaaatcttcccgggactaccgctaccattcggactggcagatggagcacagggtttcg
ggtagcggccagcgctcaccccgtgaacagcgctcaccgtatgactctcgctcgcccttc
gagtactcgtctgaccacaagagcacacccgaacaggtctggagcagccgaaagacataa
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integrated database retrieval system
