Paramisgurnus dabryanus (large-scale loach): 135718358
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Entry
135718358 CDS
T10799
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
135718358
04121 Ubiquitin system [BR:
pdab04121
]
135718358
Transcription factors [BR:
pdab03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
135718358
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
135718358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like
ZBED1_RNase-like_helical
DUF8247
DUF659
FAM200-ZBED5_RNase-like
Thiolase_N
Motif
Other DBs
NCBI-GeneID:
135718358
NCBI-ProteinID:
XP_065096779
LinkDB
All DBs
Position
10:28408866..28410414
Genome browser
AA seq
471 aa
AA seq
DB search
MELEPRYTIPCRTTMSARIVKLYDTTRENIKIVLQDKKLALTTDGWTSVATHAYVTITAH
FISDTWELENFVLCTKKLRGSHTAAHVAESISNTLEEWNISREAVIAVATDNAQNYVKAI
RDLSLLHVPCLAHTLNLAVRKGLEVRAIETALSRLKQTSAHFGKSPADCCLLEAKQELFG
LKKERLINDCVTRWNTTYDMIGRASKQQAAVAAAIFEKKMSHLELSTSEWSLVEQIKDTL
KPFKIATQALSTDAYPTASAILPLQHVMLSQLTAPDATQRAIKEMKVRMVDILKPRYSEN
NTEWMLLNKAALLDPRFSRLVHLSPGQKHLVIESLSQELKETESDTDCECAQEREDVAPA
LGAMGSLFVDMYKSIDSATRSNGSGIQELTSYMTEPPLPADSNTLHWWRDTGCNKYSLLS
TLARKYLCVPGTSVRSERVFSIAGNIVNKKRAALDPDQVDRLVFLANNIKQ
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggaacttgagccacgatacacaattccatgtcgcaccactatgtccgcccgcatagta
aagttgtatgacaccacacgagaaaacattaagatcgtattgcaggacaagaaactcgct
ctaactacagacgggtggacatcagtcgccacacatgcttacgtgacaatcacagcgcac
ttcatttcagacacatgggagctagagaatttcgttctttgcacgaaaaaactaagggga
agtcacacagctgcccatgtcgcagagagcatcagcaacacactggaagaatggaatata
tcccgtgaagcagtaatagcggttgccacagacaatgcgcagaattatgtgaaagccata
cgcgatttaagcctcttacatgtaccttgtttagcacacacgttaaacctagccgtgcgc
aagggactagaggtaagggctattgaaactgccctttctcgccttaaacagacatcagct
cattttggaaagtctcctgctgactgctgcctgttggaggcaaagcaggagctttttgga
ctaaaaaaggagagactgataaatgactgcgtcacgagatggaacacgacgtatgacatg
atcggtcgtgcctccaaacagcaagcagccgtggccgcggccatttttgaaaagaaaatg
tcccacttggaactcagcacttcggagtggtctttggttgaacaaataaaagacacactg
aaaccattcaaaattgcaactcaggccctctccactgatgcctatcctacagcatccgcc
atcctccctctacaacatgttatgctctctcagctgaccgctcctgacgcaacacagaga
gctatcaaagaaatgaaagtgcggatggtcgacattttaaaaccgcgctacagtgaaaac
aacacagaatggatgcttctcaataaagcggcccttctggatccccggttcagccgcttg
gttcacctttcgcctggacagaaacacctcgtaatagaaagcttatctcaggagctgaag
gaaactgaaagtgataccgactgtgaatgtgcgcaagagagggaagacgtggctccggct
ttaggtgcaatgggaagcttgtttgtggacatgtataaatcgatcgactcggccacacgc
agtaacggctctggtatccaggagcttacaagctacatgactgaacctcctctccccgca
gacagcaacacgctgcattggtggagagacacaggctgcaacaaatactcacttctctca
acactggcgcgcaaatacctgtgtgtgccaggcacgtctgtgcgctccgaacgtgtgttc
tccatcgcggggaacatcgtaaataaaaagagagccgcacttgatccagatcaagttgat
agattggtgtttcttgcaaacaatattaagcaatga
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