Paramisgurnus dabryanus (large-scale loach): 135718775
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Entry
135718775 CDS
T10799
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510
Focal adhesion
pdab04512
ECM-receptor interaction
pdab04518
Integrin signaling
pdab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135718775 (col6a1)
04518 Integrin signaling
135718775 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135718775 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135718775 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pdab04147
]
135718775 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135718775 (col6a1)
Exosome [BR:
pdab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135718775 (col6a1)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135718775 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
135718775 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
135718775
NCBI-ProteinID:
XP_065097080
LinkDB
All DBs
Position
14:complement(8731572..8774818)
Genome browser
AA seq
1007 aa
AA seq
DB search
MARNGYILSALCALLAVIGAQDVQPTTFRDCPVDLFFVLDTSESVALRSKPPEFYINQLK
DFTKLFIDELEDNIVRQPCDRDLTWNSGALHYSDDVELVMQLVDLKTKRPQLKAAIDKIS
FIGKGTYTDCAMKEGIGELLRAGSYYHENKFMVVITDGHPATGYKEPCGGIREAANEARQ
HGIKVFGVAVLPDAEDSRLAIIATNQNYRQNFTAADSNRTIQLSSIRRMINIITNETKDV
CCSFDCHAPGGSVGPPGETGYRGEPGRHGMPGEKGDVGSAGHPGDTGPVGYQGMKGDQGI
KGAKGDRGHAGYKGEKGKHGLDGIDGRKGEPGFSGLPGCKGSPGPDGLQGEPGPKGDPGR
YGRKGEKGDPGKEGEPGRPGNYGPSGPKGDRGSRGPNGDKGERGDDGPPGPDGPRGERGL
GGEKGEQGSRGNRGPRGEPGEPGPRGEQGREGSAGPNGDPGVPGRQGAPGYRGDEGPTGP
EGAKGPRGIKGAPGDRGLMGERGTDGPQGNGTEGCHGFQGYPGPRGDPGAPGGKGTPGPK
GDDGEPGDPGVDNGSPGPPGPKGAKGHRGPEGRVGPPGPPGPAGADECEILDIIMKMCSC
CECKCGPLDIAFVVDSSESIGANNFAIAKDFIITVMNRLKLKQFGANESRIGVVQYSGNN
AQEVVQLGDPNIKTLIDLKEAVKKLRWIAEATYTGEALQFSLNKMISKLVTERSIVLVLT
DGRSDTLRDDVPLNVLCGKGLRVGGVGVSDYARRSPNLEQVDEVVCKNDPRKGFSFVLDN
FAILLDDSFLQNLTEKICAEKKCPTYTCPISFTSNTDILIMMDSSASVGSKNFNMTKDFV
QKLSNRFLFAEKGNFQVRVAVGQYSNSAKLEAEFSKNATQVAGQIAGAKFQSAGTQVTNA
LTFAIQRFRQSGGNRKKKLLVFSDGRSQGINAIQMEKAVEQVSSAGIELYVLAVGNQVNE
AHLRTLVSRGRPYDNTYAYRHLFKVPDYRSMVSGVFYQTVSRKISLD
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaatggatatatattaagcgctctgtgcgcgcttttggcagtcatcggcgca
caggatgtccaaccaaccaccttcagagattgtcctgtggatttgttttttgtgttggac
acttctgaaagtgtggcgctcagatccaaaccaccagagttctacatcaaccaactcaaa
gacttcactaaactattcattgatgagctggaggacaatatagtgcgacagccatgtgat
cgtgatcttacgtggaattctggagcgctacattacagtgatgacgttgagctggtgatg
cagttagtcgacctgaagacaaaacgtcctcagctgaaagctgccattgacaaaatctct
ttcatcggcaaggggacatacactgactgtgccatgaaggaggggatcggcgagttgctg
agagcgggatcctactatcatgagaacaagttcatggtggtgatcacagacggtcaccct
gcgactgggtacaaggagccatgtggtgggatccgagaggctgccaatgaggcacggcag
cacggcatcaaagttttcggtgtggccgtattacctgacgcagaggacagcagactggct
atcattgccacaaaccagaattacagacaaaacttcacagctgcagatagcaaccgtacc
attcaactgagcagcataaggagaatgattaacataatcacgaatgaaacaaaggatgtg
tgctgctcctttgactgccacgctcctggaggctctgtaggaccacccggtgagacagga
tatagaggagagcctggaagacatggcatgccgggagagaaaggagatgttggctctgcg
ggacatcctggtgatacaggtccagtcggttaccaaggaatgaagggtgaccaaggaata
aaaggtgcaaagggagacagaggtcatgcaggatacaagggagagaaaggaaagcatggc
cttgatggaatcgatgggcggaagggtgaacccggattctctggtcttccaggctgcaaa
gggtcaccggggccagatggcttgcaaggagaacctggccctaaaggggatcccggtcga
tatgggaggaagggagagaaaggtgaccctggcaaagagggcgaaccaggaagacccgga
aactacggaccttcaggaccaaagggtgacaggggttctcgtggtcccaatggtgataaa
ggcgagagaggagatgatggaccaccaggaccagacgggcctagaggagagagaggctta
ggtggggagaaaggtgaacaaggttcccgtggtaacagagggcctagaggcgagcctggc
gagccaggaccccgaggtgagcaagggcgcgagggatcggcaggaccaaacggagacccg
ggtgtgccaggaaggcagggggcaccaggttatcgaggtgatgagggtcctaccgggcca
gagggagctaaagggcccagaggaattaaaggggcccccggtgacagaggtctgatggga
gagaggggaacagatggaccacaaggaaacggtactgagggctgtcatggtttccagggt
tatcctgggccaaggggagatccaggagcacctggtggaaaaggaactcctggacccaag
ggagacgatggagagccaggtgacccaggagtagataatggcagtcctggaccacctggg
ccaaaaggtgccaaaggccacagaggacccgaaggaagagttggaccaccaggaccacct
ggacctgcaggagctgatgaatgtgagattctggatatcatcatgaagatgtgctcttgt
tgtgaatgcaagtgcggacccctggacatcgccttcgttgtggacagttctgaaagtatt
ggagctaataactttgcaattgctaaagacttcatcataactgtaatgaacagacttaaa
ttaaaacagtttggtgctaatgagtcccgtattggtgtggtgcagtacagtggcaacaat
gctcaagaggtcgtacaacttggtgacccgaatatcaagaccctgatagacctaaaagaa
gctgtgaagaagttgcgctggattgctgaagctacgtacactggagaagctctgcagttt
tcgctgaacaaaatgattagcaagcttgtgacggagaggagcatcgtcctcgtgcttact
gatggacgctcggacaccttaagggacgatgtgcccctaaatgtattgtgtggcaaggga
ctaagggtcggtggtgttggtgtgagcgattatgcaagaagatcaccaaatctagaacag
gttgatgaggtcgtatgcaaaaatgatccgagaaaaggtttctcctttgtacttgacaac
tttgccatcctgctggatgacagcttcttgcaaaacctgactgagaaaatctgcgcagaa
aagaaatgccccacttatacttgtccaatttcgtttaccagtaacacagacattctcatc
atgatggacagctcggccagcgtcggctccaaaaactttaatatgacaaaagactttgta
caaaagctgtccaatcgtttcctgtttgccgaaaaggggaacttccaggttcgggtggcc
gttggccagtacagcaacagcgccaagttagaggcagaattttccaaaaacgccacccag
gtggctggtcagatcgcaggggccaagttccagagcgcaggtacgcaggtgacaaacgct
ctcacctttgccattcagcgcttcaggcaatcaggaggaaacaggaagaagaagcttctg
gtcttctcggatggtcgttcccaaggcattaacgccatccagatggagaaagctgtggag
caggtgagcagcgctggcattgagctgtatgtgctggcagtaggcaatcaggtgaatgag
gcacacctgcgtaccttggtgagccgcggccgaccctatgacaacacttacgcctaccgt
cacctttttaaagtgcctgactaccgttcgatggtcagtggtgtcttttaccaaactgtc
tcccggaagatttccctggactga
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