KEGG   Paramisgurnus dabryanus (large-scale loach): 135718857
Entry
135718857         CDS       T10799                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    135718857 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdab03019]
    135718857 (cstf1)
Messenger RNA biogenesis [BR:pdab03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     135718857 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta CSTF1_dimer Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_WDR75_2nd Beta-prop_SPT8 Frtz PROPPIN DUF7099
Other DBs
NCBI-GeneID: 135718857
NCBI-ProteinID: XP_065097259
LinkDB
Position
14:complement(4530726..4537484)
AA seq 431 aa
MFRPKPTLKDRQHLYSLIISQLLYDGYTTIANSLISEVKPQNVVSPSEQLMQLAKIGLEN
DDSAVQYAIGRSETVAPGVGIDMEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPLEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVCYNPTANSYVTCSKDGSIKLWDGVSNRCVTTF
EKAHDGAEVCSAVFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQTHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgttccgacccaaacccacactgaaggacagacagcatctctacagtttgatcatcagc
cagctgctgtatgatggctacaccaccatcgccaacagcctgatcagtgaagtcaaaccc
cagaacgttgtttctccatcagagcagctcatgcaactggccaagatcggactggagaac
gatgacagcgctgtgcagtacgccattggacgctctgagactgtggcacctggtgtgggc
atcgatatggagtttgatgcagatgtccagaccatgtccccggaggcgtccgagtatgag
acctgctacgtgacgtctcataagggtccgtgtcgtgtcgccacctacagccgcgatggg
cagctcattgcaacaggctctgctgatgcctcaattaagatcctggacacagaacgcatg
ctggccaaaagcgcaatgcctctggaggtgatgatgaacgaaacagcccagcagaacatg
gagaaccaccctgttatcagaaccttgtacgatcatgtggatgaagtcacctgtctagct
tttcacccaaccgaacagatcctggcctccggctcccgtgactacacccttaaacttttc
gattattcaaagccatcagccaaaagagccttcaagcacatacaggaagctgaaatgtta
cgctccatctcattccacccctctggagatttcttactggtgggtactcagcaccccacc
ctgcgcctttacgacgtcaacactttccagtgtttcgtctcctgcaatcctcttgatcaa
cacacagacaccatcagcggagtctgttataatcccaccgccaatagttatgtcacctgc
agcaaagacggcagcatcaaactttgggatggagtgtccaaccgatgcgtgaccactttc
gagaaagcacatgatggcgctgaggtctgttcggcggtcttctccaagaactccaagtat
attctgtcaagtggaaaagattctgttgccaagttatgggaaatttccaccggccggact
ttggtgaagtacacaggcgctgggctcagtggtcgacaaacacaccgaactcagggtgtt
tttaaccacacagaagactacgtgctgctgccggatgagcgaaccatcagcctgtgctgc
tgggactcacgaacagccgagagaaaaaacttgctctcgctgggccacaataacattgtg
cgctgcattgtacactcacctaccaacccaggcttcatgacctgcagcgatgacttccga
gcccgattctggtatcgccgtaccaccactgactga

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