KEGG   Paramisgurnus dabryanus (large-scale loach): 135719319
Entry
135719319         CDS       T10799                                 
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
  KO
K19719  collagen type II alpha
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510  Focal adhesion
pdab04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135719319 (col2a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135719319 (col2a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pdab00536]
    135719319 (col2a1b)
Glycosaminoglycan binding proteins [BR:pdab00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135719319 (col2a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 135719319
NCBI-ProteinID: XP_065098055
LinkDB
Position
14:30259720..30335733
AA seq 1489 aa
MILSLHPRTLLLLVATQVAFVAVVRCQEEGDDQDPGSCVQDGQLYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPVCAADPPSPGLPGVKGQKGEPGDITDVVG
PRGPAGPTGPPGEQGPRGARGDKGEKGNPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLGG
NFGAQMAGGFDDKASAQMGVMQGPMGPMGPRGPPGANGAPGPQGFQGNPGEAGEPGSAGS
MGPRGPPGSPGKPGDDGEPGKPGNSGERGPNGPQGARGFPGTPGLPGIKGHRGYPGSDGA
KGESGAVGSKGEAGSTGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGP
VGIIGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGAPGPSGASGNPGTDGIPGS
KGSVGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDAGLAGFKGEAGPKGEIGNAGP
QGAPGPAGEEGKRGPRGEPGAIGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGSPGS
SGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKAGPSGAPGEDGRPGPPGPQGVRGQ
PGVMGFPGPKGGNGEAGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGVAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGAGPAGLQGP
RGLPGTPGTDGPKGGVGPAGLSGAQGPPGLQGMPGERGTPGISGPKGDRGDIGEKGPEGA
PGKDGARGLTGPLGPTGPSGPNGEKGESGPAGPSGPAGTRGVPGDRGETGPPGPAGFAGP
PGADGQPGVKGEQGEGGQKGDAGAPGPQGPSGSPGPQGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPAGSAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTSGEKGE
PGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDRGP
PGPVGSPGLTGSAGEPGREGNPGSDGPPGRDGAPGIKGDRGETGPFGSPGAPGGTGAPGP
VGPTGKQGDRGEAGPKGPSGPPGPAGGRGMPGPQGPRGDKGESGDLGDRGQKGHRGFTGL
QGLPGPPGQPGDQGATGPAGPGGARGPPGPVGPSGKEGTNGMPGPIGPPGPRGRSGETGP
AGPSGNPGPPGPPGPPGPGIDMSAFAGLSNLENGPDPSRYMRADQAADGIRQHDTEVDAT
LKTLNNQMENIRSPDGTKKNPARTCRDLRLCHPDWKSGEYWIDPNQGCTVDAIKVFCNME
TGETCVYPKPLNIPRKNWWTTKGTERKHVWFGEAMNGGFHFSYGDDNLAPNTASIQMTFL
RLLSTEASQNLTYHCKNSVAYMDEANGNLKKALLLRGSNDVEIKAEGNSRFTYTVLEDGC
KKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq 4470 nt   +upstreamnt  +downstreamnt
atgatcctgtcgctacatccaaggactttactgctattagtggcaacacaagtcgcattt
gtggccgttgtcagatgccaggaggaaggagatgaccaggatccaggcagctgcgttcag
gacggccagctctatagcgacaaggatgtgtggaaaccggagccatgtcgcatttgtgtt
tgtgacactggcacggtcctgtgtgatgaaatcgtctgtgaggagctgaaagactgtccc
aaacccgagatcccatttggggagtgctgcccggtctgtgctgctgacccgccttccccc
gggttgccaggtgttaagggacaaaagggggaaccaggagacataacagatgttgtgggg
ccgaggggaccggcggggcctacgggaccgccaggagaacaaggaccacggggagcgaga
ggagacaagggcgagaagggaaatcctggcccccgtggtagagatggtgaacccggtatc
cctggaaaccctgggccccctggacccccggggccaaatggaccccctggccttggtgga
aactttggtgctcagatggccggtggatttgatgataaagctagcgcacaaatgggtgtg
atgcaaggaccaatgggaccgatgggcccgcgaggaccaccaggcgccaatggagctcct
ggcccacaaggatttcaaggaaacccaggagaagccggagagcccggatcagccggctcg
atgggtccccgtggcccacctggttccccaggcaaaccaggagatgatggtgaaccagga
aaacctggtaatagtggtgaacgtggaccaaatggacctcagggagcccgtggatttcca
ggaacaccaggtctacctggaatcaagggacacagaggttacccaggttctgacggtgct
aaaggagaatctggagctgttggatctaaaggtgaggctggctcgaccggagagagcggg
gctcctggaccaatgggtcctcgtggtttacctggtgaacgtggacgcccaggaccttct
ggagctgctggtgctcgtggaaatgatggcttacctggtcctgctggtcctccgggtcct
gtgggtataattggagcacctggtttcccaggatctcccggggctaagggtgaagcaggt
cctactggtgcccgtggacctgagggtgcacaaggacctcgtggagagtctggtgtgcct
ggagctccaggaccttctggagcctctggtaaccctggcacagatggcatccctggatcc
aaaggatcagttggggcttctggtattgccggtgctcctggttttccgggtcctcgtggc
cctcctggacctcagggtgcaacaggtcctcttggacccaagggacagtctggtgatgct
ggcctggcagggttcaaaggtgaagctggtcctaaaggagagattggtaatgctggacct
caaggcgcccctggccctgcgggagaggaaggtaagcgaggacccagaggagagcctggt
gcaattggacccctcgggccacctggagaaagaggtgcacctggtaaccgaggttttcct
ggacaagatgggctggctggtccaaagggcgctccgggtgagcgtggatctccgggatca
tcagggcctaagggagccggcggtgatccgggacggcctggagaacccggtctgcccggt
gcaagaggtctaaccgggcgtccgggtgatgctggtccacagggcaaagctggtccatct
ggagctcctggtgaagatggccgtccaggaccaccgggccctcagggtgttcgcggtcag
cctggagtgatgggattccccggacccaagggcggcaatggtgaggctgggaaagctgga
gagaagggactcgctggagctccaggtttacgtggtctgcctggtaaagatggtgagacc
ggtgcggcgggacctccaggaccagctggggttgcaggtgaaagaggtgaacagggtcag
cccggtccttcaggtttccagggtctgcccggacccccaggcccccctggtgagggaggt
aaacctggtgaccagggtgttccaggagaagccggcgccgctggagccacaggacctcga
ggtgagcgtggtttcccaggagagagaggaggtgcaggaccagctggccttcaggggcct
cgtggtcttccaggaacaccaggaactgatgggcccaagggtggtgttgggcctgctggt
ctttctggcgctcagggtcctccaggtttgcagggaatgcctggtgaaagaggaacgcct
ggaatttcaggaccaaagggtgacagaggtgacattggtgagaaaggacctgaaggtgct
cctggtaaagatggtgcaagaggtttgacaggtccacttggtcctactggtccttctgga
cccaacggtgaaaagggagaatctggacctgcggggccctctggacctgccggtacccgt
ggagttcctggtgacagaggagaaactggtcctcctggtcccgctggttttgctggtcca
ccaggtgcagatggacagcctggtgttaaaggagaacagggtgaagggggacagaaaggt
gacgctggtgctcctggccctcagggaccctccggatctccaggtcctcagggaccaact
ggtgtgtctggaccaaagggggctcgtggtgctcaaggacctcctggtgccacaggtttc
cctggagctgctggtcgagttggaccgccaggtcctaatggtaacccaggtcctgctggt
tctgctggccctcctggtaaagatggtccaaagggtgtacgtggtgatggcggtcctcct
ggaagaccgggtgatgctggcttacgtgggccagctggtacttcgggcgagaagggagag
cctggtgaagatggtcctcctggtccggatggcccatcaggtccccagggtctggcagga
cagcgtggtattgttggacttcctggacagcgtggtgaaagaggttttcctggcttgcct
ggaccttctggagagcctggaaaacaaggggctgctggtggacctggagatcgtggaccc
ccaggacctgtaggatctcctggactgacaggatctgctggagaacctggtcgagaggga
aatcctggatctgatggtcctcctggtcgagatggtgctccaggaatcaagggtgacaga
ggtgaaaccggtccatttggatctcctggtgctccaggtggtactggtgcacctggtccg
gtcggacccaccggtaaacagggagacagaggagaggccggaccaaaaggaccttctgga
cctcctggccctgctggaggtcgaggaatgcctggaccacaaggaccacgtggagataag
ggagagtctggtgatttgggtgatcgaggacagaaaggacacagaggattcaccggactt
cagggtttgccagggcctcctgggcagcctggtgaccagggtgctactggacccgctgga
ccaggtggagcgagaggacccccaggccctgttggtccatctggaaaagagggaacaaat
ggaatgcctggacccatcggaccccctggacctcgtggtcgttctggagagactgggcca
gccggtcccagtggaaaccccgggccccccggtcctcctggccctccagggcctggcatt
gacatgtctgcatttgctggtctctctaaccttgagaatggtccagatccctcgaggtac
atgagggcagaccaagccgcagacggaattcgccagcatgacacagaggtagatgccact
ctgaagaccctgaacaaccagatggagaacatccgcagccctgatgggactaagaagaac
cctgcccgtacctgcagagatctccgactctgccacccagattggaagagtggcgagtac
tggatcgatcctaaccagggctgcactgttgatgctatcaaggtgttctgtaacatggag
actggtgagacctgtgtgtatccaaaacccttaaatataccacgcaagaactggtggacc
acgaagggtactgaacgcaagcatgtttggtttggagaagccatgaatggtggattccac
tttagctatggggatgacaatctggcacctaatacagcaagtatacagatgaccttcctg
agactactgtccacagaggcctcacagaacctgacataccactgcaaaaacagcgtggcc
tacatggatgaagccaatggcaacctgaagaaagctctgctgctgcggggctccaacgac
gtggaaatcaaggcagagggcaacagccgtttcacttacactgttcttgaggatggctgc
aagaaacacacaggacaatggggaaagacagttattgaatacaggtcacagaagacttca
cgtctacccattgtggacattgcacctatggatattggaggagcaaaccaggagtttgga
gtggatgtgggcgcagtctgtttcttataa

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